Rhinopithecus roxellana (golden snub-nosed monkey): 104658249
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Entry
104658249 CDS
T03989
Symbol
PALB2
Name
(RefSeq) partner and localizer of BRCA2 isoform X2
KO
K10897
partner and localizer of BRCA2
Organism
rro
Rhinopithecus roxellana (golden snub-nosed monkey)
Pathway
rro03440
Homologous recombination
rro03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
rro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
104658249 (PALB2)
03460 Fanconi anemia pathway
104658249 (PALB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rro03400
]
104658249 (PALB2)
DNA repair and recombination proteins [BR:
rro03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
104658249 (PALB2)
FA (Fanconi anemia) pathway
Downstream FA components
104658249 (PALB2)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PALB2_WD40
zinc_ribbon_16
Beta-prop_WDR19_1st
Motif
Other DBs
NCBI-GeneID:
104658249
NCBI-ProteinID:
XP_010356521
UniProt:
A0A2K6QJ73
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Position
20:complement(429248..467632)
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AA seq
1184 aa
AA seq
DB search
MEEPPGKPLSCEEKEKLKEKLAFLKREYSKTLARLQRAQKAEKVKHSIKKTVEEQDCLSQ
QELSPQLNHSEPKNKIRVYDKLHIKTHLDEETGEKTSVTLDVGPESFNPGDGPGGLPIHR
TDDTQEHFPHRVSDPDGEQKQKLPGRRKKQQKRTFISQERDCVFGTDSLRLSGKRLKEQE
ETSSKNPARSPVTEIRTHLLSLESELPDSPEPVTETNEDSVFIPPTAQPEKGVDTLLRRP
DFTRATTVPLQTPTDSSSSQHLEHIPPKGSSELTTHGLKNIRFTSPVSLEAQGKKVTVPT
DNLVVNKAVSKSGQLPTSSNLEADISCSLNELTHNNLPANENQNLEQNQTEKSLKSPSDT
LDGRNENLQENEILSQPKSLSLEATSLLSAEKHSCTMLEGLLFPAEYYVRTTRSMSNCQR
KVALEAVIQSHLDVKKKGFKNKNKDASITLNLSNEETDQSEIRMSDTCTGQPSSRTSQKL
LSLTKVSSPTGPTEDNDLSRKAVAQAPSRRYRGKRKSACTPASDHCEPLLPACNPSVISR
SKEEVTSHKYQNKKAVTLVKGKKSHQKEDSLSWSNSAYLSLDNDAFTDSFHKDGMLSLKQ
LLSFLSITDFQLPDEDFGPLKLEKLKSCSEKPVESFESNMFGERHLKEGNCIFPEELSPK
RMDTEMEDLEEDLIVLPRKSHPKRPNPQSQHTKTGLSSSILLYTPLNTVALDDNDRPTAD
MCSPLFPILGTTPAFGPQGSYEKASTEVAGQTCRTPQLAHLKDSVCLASDSKQFDSSSSP
AKPHTTLQMSGRQGQPTCDCDSTLPGTPPPIESLTFKENQLCGNTCQELHKHSVEQTETA
ELPASDSINPGNLQLVSKLKNPSGSCSVDVSAMFWERAGCKEPCIITACEDVVSLWKALD
AWQWEKLYTWHFTEVPVLQIVPVPDVYNLVCVALGNLEIREIRALLCSSDDESEKQLLLK
SGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGM
QEALLGTTVMNNIVIWNLKTGQLLKKIHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKES
ELLQSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDL
LLGQCTALLPPISDQHWSFVKWSGTDSHLLAGQKDGNIFVYRYS
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
atggaagagcctcccgggaagcccctcagctgtgaggagaaggaaaagttaaaggagaaa
ttagcattcttgaaaagggaatacagcaagacactagcccgccttcagcgtgcccaaaaa
gctgaaaaggttaagcattctattaagaaaacagtagaagaacaagattgtttgtcccag
caggagctctcaccgcagctaaaccactcagaacctaaaaataaaatacgtgtttatgac
aagttacacatcaaaacccatcttgatgaagaaactggagaaaagacatctgtcacactt
gatgttgggcctgagtcctttaaccctggagatggcccaggaggattacctatacacaga
acagatgacacccaagaacattttccccacagggtcagtgaccctgatggtgagcaaaag
cagaagctgccagggagaagaaagaagcagcagaagagaacatttatttcacaagagaga
gactgtgtctttggcactgattcactcagactgtctgggaaaagactaaaggaacaggaa
gaaaccagtagcaaaaatcctgctagatcaccagtaactgaaataagaactcacctttta
agtcttgagtctgaacttccagattctccagaaccagttacagaaaccaatgaagacagt
gtattcattccaccaactgcccaaccagaaaaaggtgtggatacactcctaagaagacct
gatttcaccagggcgactacagttcctttacagactccaacagatagcagtagtagtcag
caccttgaacatattcctcccaaaggcagcagtgaacttactactcacgggctaaaaaac
attagatttacttcacctgtaagtttggaggcacaaggcaaaaaagtgactgtccctaca
gataacctcgttgtaaacaaagctgtaagtaaaagtggccagctgcccacaagttctaat
ttagaggcagatatttcatgttctctaaatgaactcactcacaataacttgccagcaaat
gaaaatcaaaacttagaacaaaatcaaacagagaaatctttaaaatctcccagtgacact
cttgatggtagaaatgaaaatcttcaggaaaacgagattctaagtcaacctaagagtctt
agcctggaagcaacctctcttctttctgcagaaaaacattcttgcacaatgcttgaaggc
cttctgtttcctgcagaatactatgttagaacaacacgaagcatgtccaattgccagaga
aaagtagccctggaggctgtcattcagagtcatttggatgtcaagaaaaaagggtttaaa
aataaaaataaggatgcaagtataactttaaacctttccaatgaggaaactgaccaaagt
gaaattaggatgtctgacacatgcacaggacaaccaagttcaagaacttctcagaaactt
ctctcattaactaaagtcagctctcccactgggcccactgaagataatgacttgtctagg
aaggcagttgcccaggcacctagtagaagatacagaggaaaaagaaaatcagcctgcacc
ccagcatcagatcattgtgaaccacttttgccagcttgcaacccatcggttattagcagg
tccaaggaggaagtcacctcacataaatatcagaacaaaaaagcagttactctagtgaaa
gggaagaaaagtcatcaaaaagaggattccctttcttggagtaatagtgcttatttatcc
ttggataatgatgctttcacagattcatttcataaggatggaatgctgagcttaaagcaa
ctactgtcttttctcagtatcacagactttcagttacctgatgaagactttggacctctt
aagcttgaaaaactgaagtcttgctcagaaaaaccagtggagtcctttgaatcaaacatg
tttggagagagacatcttaaagagggaaattgtatttttccagaggaactgagtcctaaa
cgcatggatacagaaatggaggacttagaagaggaccttattgttctgccacgaaaatca
catcccaaaaggccaaacccacaaagccagcatacaaagacaggcctttcttcatccata
ttactttatactcctttaaatacagttgcgcttgatgataatgacaggcctactgcagac
atgtgttcacctcttttccccatcttaggtactactccagcctttggccctcaaggctcc
tatgaaaaagcttccacagaggtcgctggacaaacttgccgcacaccccaacttgctcat
ttgaaagactcagtctgtcttgccagtgatagtaaacaattcgacagttcaagcagtcca
gcaaaaccacataccacgctgcagatgtcaggcaggcaaggacaacctacctgtgactgt
gactctaccctgccgggaacacctccacccattgagtcattgacttttaaagaaaatcag
ctctgtggaaacacatgccaggagttgcataaacattccgtcgaacagactgaaacagca
gagcttcctgcttctgatagcataaacccaggcaacctacaattggtttcaaagttaaag
aatccttcaggttcctgttccgtagatgtgagtgccatgttttgggaaagagccggttgt
aaagagccatgtatcataactgcttgcgaggatgtagtttctctttggaaagctctggat
gcttggcagtgggaaaaactttatacttggcacttcacagaggttccagtattacagata
gttccagtgcctgatgtgtataatcttgtgtgtgtagctttgggaaatttggaaatcaga
gagatcagggcattgctttgttcctctgatgatgaaagtgaaaagcaattactactgaag
tctggaaatataaaagctgtgcttggcctgacaaagaggaggctagttagtagcagtggg
accctttctgatcaacaagtagaagtcatgacatttgcagaagatggaggaggcaaagaa
aaccaatttttgatgccccctgaggagactatattaacttttgccgaggtccaagggatg
caagaagctctccttggtactactgttatgaacaacattgttatttggaatttaaaaact
ggtcaactcttgaaaaagatacacattgatgattcttaccaagcttcagtctgtcacaaa
gcctattctgaaatggggcttctgtttattgtcctgagtcatccctgtgccaaagagagt
gagttgttgcaaagccctgtgtttcagctgattgtgattaaccctaagacgactctcagt
gtgggtgtgatgctgtactgtcttcctccagggcaggctggcaggttcctggaaggtgac
gtgaaagatcattgtgcagcagcaatcttgacttctggaacaattgccatttgggactta
cttctcggtcagtgtactgccctcctcccacctatctctgaccaacattggtcttttgtg
aagtggtcaggtacagactctcatttgctggctggacaaaaagatggaaatatatttgta
taccgctactcgtaa
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