Rhinopithecus roxellana (golden snub-nosed monkey): 104661971
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Entry
104661971 CDS
T03989
Symbol
COL13A1
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X1
KO
K16617
collagen type XIII alpha
Organism
rro
Rhinopithecus roxellana (golden snub-nosed monkey)
Pathway
rro04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
rro00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
104661971 (COL13A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
rro00536
]
104661971 (COL13A1)
Glycosaminoglycan binding proteins [BR:
rro00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104661971 (COL13A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
104661971
NCBI-ProteinID:
XP_030796614
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All DBs
Position
11:complement(135784055..135948804)
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AA seq
675 aa
AA seq
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MVAESTHKAAATGACGPGELGAPGTVALAAARAERGARLPSPGSCGLLALALCSLALSLL
AHFRTAELQARVLRLEAERGEQQMETAILGRVNQLLDEKWKLHSRRRREAPKTSPGCNCP
PGPPGPTGRPGLPGDKGAIGMPGRVGVKGQPGEKGSPGDAGLSIIGPRGPPGQPGTRGFP
GFPGPIGLDGKPGHPGPKGDMGLTGPPGQPGPQGQKGEKGQCGEYPHRECLSSMPAGLRS
SQIIALKGEQSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGY
HGRKGERGMPGMPGKHGAKGTPGIAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQKGEK
GDAGNSIGGGRGEPGPPGLPGPPGPKGEAGVDGQVGPPGHQGDKGEPGAAGEQGPAGPKG
SKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQKGEIGLPGPP
GHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGMKGENGHPGSPAEKGEKGETGQAGSVGLQ
GVPGPKGEAGLDGAKGEKGVQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPAGPK
GERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGDRGKKGSRGPKGDKGDQGAPGLDAPC
PLGEDGLPVQGCWNK
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atggtagcggagagcacccacaaagcggcagccaccggtgcctgcggccctggggagttg
ggcgcgcccgggacggtggctctggcggcggcgcgggcggagcgcggcgcacggctgccg
agtccggggtcgtgcgggctgctggcgctggccctctgctcgctggcgctcagcctgctc
gcccactttcggacggccgagctgcaggcccgggtgctgcgcctggaagcggagcgcggg
gagcagcaaatggagacggctattttgggacgagtcaaccaactgctggacgagaaatgg
aagctccactcaaggaggcgccgggaggccccaaagacatctccaggatgtaactgcccg
ccaggacctcctggtcccactggaagacctggactcccaggggacaaaggtgccattggg
atgcctggacgtgtgggagtaaagggtcaaccaggcgagaaggggtcccccggagatgct
gggctgtccatcattggcccccgcgggccccctggtcaaccaggcactcgaggttttcct
ggatttccgggtcccattgggctggacggcaaaccgggccacccaggaccaaagggcgac
atgggtctgacgggtcccccaggacagccgggacctcagggacaaaaaggagaaaagggt
cagtgtggagagtacccacaccgggagtgcctaagcagcatgccagcaggtctgcgctcc
agccagataattgccctgaagggtgaacagagccaagccagcatccaaggtccaccaggg
cccccaggcccccctggaccaagtggacctctggggcacccaggactgccaggacccatg
gggccacccggcttacctgggcctcctggaccaaagggagacccagggatccagggctac
cacggccggaagggagaacggggcatgccagggatgcccggcaagcatggagccaagggg
actcccggaattgccgtagctgggatgaagggtgagccagggatcccaggaaccaagggt
gagaagggggctgaaggctcccctgggcttcctggcctcctggggcagaagggagagaaa
ggcgatgctggcaactccattggaggaggcagaggggaacctggccctccagggctccct
ggacccccagggccaaagggagaagcgggtgttgatggccaggtcggccccccagggcac
caaggagacaagggggagcctggagcagctggagaacagggaccagctggccccaagggc
tccaagggagaaccagggaaaggagagatggtggattacaatggaaacatcaatgaggct
ctccaggagatccggacactggccttgatggggcctcctggtcttcctgggcaaattggc
ccacctggagctccagggattccaggccagaagggggagattggactgccaggccctcca
ggacacgatggggagaagggacctcgcggtaaaccaggagacatgggccctcctggtccc
caaggccccccaggaaaggatggacctccaggaatgaaaggagaaaacgggcacccaggg
agcccagcagaaaagggagagaaaggggagacaggacaagcaggctcggtggggctccaa
ggtgttcctggaccaaagggggaagcaggactagatggagcaaaaggagagaaaggcgtc
cagggagaaaaaggagaccgtggtcccctgggactacccggagcttcaggtttggacggc
aggcctgggccaccgggtactccaggaccaattggagttccaggcccagcaggaccaaag
ggcgagaggggcagcaaaggagaccctgggatgacaggaccaacgggagcagctgggctt
cctggtttacatggaccacctggggacaagggaaaccggggggatagggggaagaaaggc
tctagagggcctaaaggggataagggagaccaaggagcgcctggattagatgccccctgc
ccgttgggcgaagatggcttgccagtccaaggctgctggaacaagtga
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