Rhinopithecus roxellana (golden snub-nosed monkey): 104667607
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Entry
104667607 CDS
T03989
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X2
KO
K06823
collagen type XVIII alpha
Organism
rro
Rhinopithecus roxellana (golden snub-nosed monkey)
Pathway
rro04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
rro00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
104667607 (COL18A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rro04147
]
104667607 (COL18A1)
00535 Proteoglycans [BR:
rro00535
]
104667607 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
rro00536
]
104667607 (COL18A1)
Exosome [BR:
rro04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
104667607 (COL18A1)
Proteoglycans [BR:
rro00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
104667607 (COL18A1)
Glycosaminoglycan binding proteins [BR:
rro00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104667607 (COL18A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
DUF959
Collagen_trimer
Laminin_G_3
DUF1970
Motif
Other DBs
NCBI-GeneID:
104667607
NCBI-ProteinID:
XP_010368420
LinkDB
All DBs
Position
13:complement(131694374..131798007)
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AA seq
1520 aa
AA seq
DB search
MAPDPSGCRVLLLLFCCLAAAQADLLNLNWLWFNNKDTSQAATTIPEPQGLLPVQPTADA
TTHVVPQDGSTEPATAPGSPEAPSELLEDSQGTPTSAESPDTPEENIAGVGAKILNVAQG
IRSFVQLWNGTVPTESLAQAETLVVEAPVGPLALPGPSSNPQENGTTLWPSRGTPSSPGA
HTTEAGTLPAPTPSPPSLGRPWAPLTGPSVPPQSSESVGEEVGLLQLLGDPPPQQITQTD
DPDVGLAYVFGPDANSGQVARYHFPSLFFRDFSLLFHIQPATEGPGVLFAITDAAQAVVS
LGVKLSGVRDGHQDISLLYTEPGAGQTHTAASFQLPAFVGQWTHFALSVEGGYVALYVDC
EEFQRMPLARSSRGLELEPGAGLFVAQAGGADPDKFQGMIAELKVRRDPQVGPMHCLDEE
GDDSDGASGDFGSGLGDTRELLREEMGTALKPRLPTPPPVTAPPLAGGSNTEDSRSEEIE
EQTTVTSLGAQTLPGSDSVSTWDGSVRTPGGRVKEGGLKGQKGEPGIPGPPGRAGPPGSP
CLPGPPGLPCPVSPLGPVGPALQPVPGPQGPPGLPGRDGTPGRDGEPGDPGEDGKPGDTG
PQGFPGTPGDVGPKGDKGDPGVGARGPPGPQGPPGPPGPSFRHDKLTFIDMEGSGFGGDL
EALRGPRGFPGPPGPPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGREGPPGFPGLPGPP
GPPGKEGPPGRTGQKGSLGEAGAPGHKGSKGDPGPAGARGESGLAGAPGPAGPPGPPGPP
GPPGPGLPAGFDDMEGSGGPLWSTARGADGPQGPPGLPGLKGDPGVPGLRGAKGEVGANG
APGFPGLPGREGTAGPQGPKGDRGSQGEKGDPGKDGVGQPGLPGPPGPPGPVVYVSEQDG
AVLSVPGPEGRPGFAGFPGPAGPKGDLGSKGERGSPGPKGEKGEPGSVFSPDGSALGPAQ
KGAKGEPGFRGPPGPYGRPGYKGDIGFPGRPGRPGMNGLKGEKGEPGDAHLGFGMRGMPG
PPGPPGPPGPPGTPVYDSNMFAESSRPGPPGLPGNQGPAGPKGAKGEVGPPGPPGQFPFD
FLQLEAEMKGEKGDRGDAGQKGERGEPGGGGFFGSSLPGPPGPPGPPGYPGIPGPKGESI
RGQPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPGPPSFPGPHRQTISVPGPPGPPGPPGP
PGTMGTSSGQVRLWATRQAMLGQVHEVPEGWLIFVAEQEELYVRVRNGFRKVQLEPRTPL
PRGTDNEVAALQPPVVQLHDSNPYPRREYSHPTARPWRADDILASPPRLPEPQPYPGAPH
HSSYVHLRPALPTSPPAHTHRDFQPVLHLVALNSPLPGSMRGIRGADFQCFQQARAVGLA
GTFRAFLSSRLQDLYSIVRRADRAAVPIVNLKDELLFPSWEALFAGSEGPLKPGTRIFSF
DGKDVLRHPTWPQKSVWHGSDPSGRRLTESYCETWRTESPSVTGQASSLLGGRLLGQNAA
SCHHAYIVLCIENSFMTASK
NT seq
4563 nt
NT seq
+upstream
nt +downstream
nt
atggctcccgaccccagcggctgccgcgtcctgctgctgctcttctgctgcctggcagct
gcccaggccgacctgctgaacctgaactggctttggttcaataataaggacaccagccaa
gcagctaccacgatccctgagccccaggggctcctgcctgtgcagcccacagcagacgcc
accacgcacgtggtcccccaggatggttccacggagccagcgacagcccctggcagccct
gaggcaccctcagagctgctggaggacagccagggcacccccacttctgccgagagcccg
gacacgccagaggagaacattgccggtgtgggagccaagatcctgaacgtggcccagggc
atccggagctttgtccagctgtggaatggcactgtgcccactgagagcttggcccaggcg
gaaacactggttgtcgaggctcctgtgggccccctcgccctccctgggccttccagcaac
ccccaggagaatgggaccactctgtggcccagccgtggcactcccagctctcctggcgcc
cacacgaccgaggctggcaccctgcctgcacccaccccatcgcctccctccctgggcagg
ccctgggcaccactcacggggccctcagtgccaccacagtcctcagagagcgtcggcgag
gaggtggggctgctgcagctccttggggaccctccgccccagcaaatcacccagacggat
gaccccgacgtcgggctggcctatgtctttgggccagatgccaacagcggccaagtggcc
cggtaccacttccccagcctcttcttccgtgacttctcgctgctgttccacatccagccg
gccacggagggcccaggggtgctgtttgccatcaccgacgcggcgcaggcagtggtctcg
ctgggcgtgaagctctctggggtgcgggacgggcaccaggacatctccctgctctacacg
gagccaggcgcaggccagacccacacagccgccagcttccagctccctgccttcgtcggc
cagtggacacacttcgcactcagtgtggagggcggctacgtggccctctacgtggactgt
gaggagttccagagaatgccgcttgctcggtcctcacggggtctggagctagagcctggc
gccgggctcttcgtggcgcaggcaggaggagcggaccctgacaagttccaggggatgatc
gctgagctgaaggtgcgcagggacccccaggtgggccccatgcactgcctggacgaggaa
ggcgatgactcagatggggcatccggagactttggcagcgggctcggggacacccgggag
cttctcagggaggagatgggcacagccctaaaacccaggctccccacgccacccccagtc
actgctccacctttggctggaggcagcaacacggaagattccagaagtgaagaaatcgag
gagcagaccacggtgacttcattaggagctcagacacttcctggctcagattctgtctcc
acgtgggacgggagtgtccggacccctgggggccgcgtgaaagagggcggcctgaagggg
cagaaaggggagccaggtattccaggccctcctggccgggcaggccccccaggctccccc
tgcctgccgggtcccccgggtctcccgtgcccggtcagtcccctgggtcctgtaggccca
gcgttgcaacctgtccccggaccacaaggacctccagggctgccagggagggatggcacc
cctggaagggacggcgagccgggtgaccctggtgaagacggaaagccgggcgacaccggg
ccgcagggctttcccgggactccaggggacgtgggccccaagggtgacaagggagacccc
ggggttggagcaagagggcccccaggaccccaaggacctccagggcccccaggaccctcc
ttcagacatgacaaactgaccttcattgacatggagggatctggcttcggtggcgatctg
gaggccctgcggggtcctcgaggcttccccggaccccccggaccccccggtgtcccaggc
ctgcccggcgagccaggccgctttggggtgaacagttctgacgtcccaggacccgccggc
cttcctggtgtgcctgggcgcgagggtccccccgggtttcctggcctcccgggaccccca
ggccctccaggaaaagaggggcccccaggaaggacggggcagaaaggcagcctgggtgaa
gcaggtgccccgggacataaggggagcaagggagaccccggtcctgctggcgctcgcgga
gagagtggcctggcaggagcccctggacccgctggaccaccaggcccccctgggccccct
gggccaccaggaccaggactccccgctggatttgatgacatggaaggctccggggggccc
ttgtggtcaacagcccgaggcgctgacgggccgcagggaccccccggcctgccaggactg
aagggggatcctggtgtgcctgggctgcggggagccaagggagaagttggagcaaacgga
gcccccgggttccccggcctccctggcagagagggcactgctgggccccaggggccaaag
ggagacagaggcagccagggagaaaagggagatccagggaaggacggagtcgggcagcca
ggcctccccggaccccctggacccccggggcctgtggtctacgtgtcggagcaggatggt
gccgtcctgagcgtgccgggacctgagggccggccgggtttcgcaggctttcccggacct
gcaggacccaagggcgacctgggctctaagggtgaacgaggctccccgggacccaagggt
gagaagggtgagccgggcagcgtcttcagccccgatggcagtgccctgggccctgcccag
aaaggagccaagggagagccaggcttccgaggacccccgggcccgtacggacggccgggg
tacaagggagacattggcttccctggacggccgggtcgccccgggatgaacggattgaaa
ggagagaaaggggagccgggagatgcccaccttggatttggcatgaggggaatgcccggc
cccccagggcctccagggcccccaggccctccagggactcctgtttacgacagcaatatg
tttgctgagtccagccgccccgggcctccaggattgccagggaatcagggccctgcagga
cctaagggcgccaaaggagaagtgggcccccccggaccaccagggcagtttccattcgac
tttcttcagttggaggctgaaatgaagggggagaagggagaccgaggtgatgcaggacag
aaaggcgaaaggggtgagcccgggggtggcggcttttttggctccagcctgccaggcccc
cccggccccccaggcccacctggctaccctgggattccaggtcccaagggagagagcatc
cggggccagcctggcccacctggacctcagggaccccccggcatcggctacgaggggcgc
cagggccctcccggccccccaggcccccctggccccccagggcccccttcatttcccggc
cctcacaggcagactatcagcgttcctggccctccgggcccccctgggccccctgggccc
cctggaaccatgggcacctcctcagggcaggtgaggctctgggccacgcgccaggccatg
ttgggccaggtgcacgaggttcccgagggttggctcatcttcgtggccgagcaggaggag
ctctacgtccgtgtgcggaatgggttccggaaggtccagctggagccccggacgccactt
ccacgagggacggacaacgaagtggctgccttgcagccccccgtggtgcagctgcacgac
agcaacccctacccccggcgggagtactcccaccccaccgcaaggccctggcgggcagac
gacatcttggccagcccccctcgcctgcccgagccccagccctaccctggagccccgcac
cacagctcctacgtgcacctgcggccagcgctccccacgagcccacccgcccacacccac
cgcgacttccagcccgtgctccacctggttgcactcaacagcccactgccgggcagcatg
cggggcatccgcggggccgacttccagtgcttccagcaggcgcgggctgtggggctggcg
ggcaccttccgcgccttcctgtcctcacggctgcaggacctgtacagcatcgtgcgccgt
gccgaccgcgcagccgtgcccatcgtcaacctcaaggatgagctgctgtttcccagctgg
gaggctttgttcgcaggctctgagggtccgctgaagcccgggacacgcatcttctccttt
gacggcaaggatgtcctgaggcaccccacctggccccagaagagcgtgtggcatggctcg
gaccccagcgggcgcaggctgactgagagctactgcgagacgtggcggacagagtctccc
tcggtcacaggtcaggcctcctccctgctggggggcaggctcctagggcagaatgctgca
agctgccaccacgcctacatcgtcctctgcatcgagaacagcttcatgactgcctccaag
tag
DBGET
integrated database retrieval system
