Rhinopithecus roxellana (golden snub-nosed monkey): 104674734
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Entry
104674734 CDS
T03989
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
rro
Rhinopithecus roxellana (golden snub-nosed monkey)
Brite
KEGG Orthology (KO) [BR:
rro00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rro03016
]
104674734
Enzymes [BR:
rro01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
104674734
Transfer RNA biogenesis [BR:
rro03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
104674734
Prokaryotic type
tRNA splicing ligases
104674734
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
104674734
NCBI-ProteinID:
XP_030771282
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All DBs
Position
13:17207046..17233987
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AA seq
505 aa
AA seq
DB search
MSRSYNDELQFLEKISKNCWRIKKGFVPNMQVEGVFYVNDALEKLMFEELRNACRGGGVG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDSEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgcagctataatgatgagctgcagttcttggaaaagatcagtaaaaactgctgg
aggatcaagaagggcttcgtgcccaacatgcaggttgaaggcgttttctacgtgaatgat
gctctggagaaattgatgtttgaggaattaaggaatgcctgtcgaggtggtggtgttggt
ggcttcttgccagccatgaaacaaattggcaacgtggcagccctgcctggaattgttcat
cgatctattgggcttcctgatgtccattcaggatatggatttgctattgggaacatggca
gcctttgatatgaatgactctgaagcagtggtatccccaggtggtgtcgggtttgacatc
aactgtggtgtccgcttgctaagaaccaatttagatgaaagtgatgtccagcctgtgaag
gagcagcttgcccaagctatgtttgaccacattcctgttggggtgggatcaaaaggtgtc
atcccaatgaatgccaaagacttggaggaggccttggagatgggggtggactggtcctta
agagaagggtatgcctgggctgaagacaaggagcactgtgaggagtacggaaggatgctg
caagctgaccccaataaggtttctgcaagagctaagaaaagaggccttcctcagttgggg
accctgggagcaggcaaccattatgcagaaatccaggttgtggatgagattttcaatgag
tacgctgctaaaaaaatgggcatcgaccataagggacaggtgtgtgtgatgatccacagt
ggaagcagaggcttgggccaccaagtagccacagatgcactggtagctatggagaaggcc
atgaagagagacaagattatagtcaatgatcggcagttggcttgtgctcgaatcgcttcg
ccagaaggtcaggactacctgaagggaatggcagcagctgggaactatgcctgggtcaac
cggtcttccatgaccttcttaacccgtcaggcttttgccaaggtcttcaacacaacccct
gatgacttggacctgcacgtgatctatgatgtttctcacaacattgccaaagtggagcag
catgtagtggacgggaaggagaggacactgttagtacacaggaagggatccacgcgcgct
ttccctcctcaccatccgctcattgctgttgattaccaactcactggacaaccagtgctc
attggtggcaccatgggaacctgtagttatgttcttactggcactgaacagggcatgact
gagacctttggaacaacctgtcatggagcgggccgtgcgttgtcccgagcaaaatctcga
cgtaatttagatttccaggatgttttagacaaattggcagatatgggaattgcaatccgt
gttgcctcacccaaactggttatggaagaggctcctgagtcctataagaatgtgacagat
gtggtgaatacctgccatgatgctggaatcagcaagaaagccattaaactgagaccaatt
gctgtgatcaaaggatag
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