Rhinopithecus roxellana (golden snub-nosed monkey): 104678957
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Entry
104678957 CDS
T03989
Symbol
HTT
Name
(RefSeq) huntingtin isoform X1
KO
K04533
huntingtin
Organism
rro
Rhinopithecus roxellana (golden snub-nosed monkey)
Pathway
rro05016
Huntington disease
rro05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
rro00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05016 Huntington disease
104678957 (HTT)
05022 Pathways of neurodegeneration - multiple diseases
104678957 (HTT)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rro03019
]
104678957 (HTT)
04131 Membrane trafficking [BR:
rro04131
]
104678957 (HTT)
03029 Mitochondrial biogenesis [BR:
rro03029
]
104678957 (HTT)
Messenger RNA biogenesis [BR:
rro03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
104678957 (HTT)
Membrane trafficking [BR:
rro04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
104678957 (HTT)
Mitochondrial biogenesis [BR:
rro03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
104678957 (HTT)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Htt_C-HEAT
Htt_N-HEAT
Htt_bridge
Htt_N-HEAT_1
HEAT
HEAT_GCN1
HEAT_2
HEAT_EF3_N
Rad26-like_helical_rpts
Motif
Other DBs
NCBI-GeneID:
104678957
NCBI-ProteinID:
XP_030775944
LinkDB
All DBs
Position
2:130563953..130719768
Genome browser
AA seq
3132 aa
AA seq
DB search
MATLEKLMKAFESLKSFQQQQQQQQQQQPPPPPPPPPPPPQLPQPPQAQQMLPQLQPPPP
PPPPPPCPAVAEEPLHRPKKELSATKKDRVNHCLTICENIVAQSVRNSPEFQKLLGIAME
LFLLCSDDAESDVRMVADECLNKVIKALMDSNLPRLQLELYKEIKKNGAPRSLRAALWRF
AELAHLVRPQKCRPYLVNLLPCLSRTSKRPEESVQETLAAAVPKIMASFGNFANDNEIKV
LLKAFIANLKSSSPTIRRTAAGSAVSICQHSRRTQYFYSWLLNVLLGLLVPVEEEHSTLL
ILGVLLTLRYLVPLLQQQVKDTSLKGSFGVTRKEMEVSPSAEQLVQVYELTLHHTQHQDH
NVVTGALELLQQLFRTPPPELLQALTTVGGIGQLTAAKEESGGRSRSGSIVELIAGGGSS
CSPVLSRKQKGKVLLGEEEALEDDSESRSDVSSSAFAASVKDDISGELATSSGVSTPGSA
GHDIITEQPRSQHTLQADSVDLASCDLTSSATDGDEEDILSHSSSQVSAVPSDPAMDLND
GTQASSPISDSSQTTTEGPDSAVTPSDSSEIVLDGTDNQYLGLQIGQPQDEDEEATGVLP
DAASEAFRNSSMALQQAHLLKNMSHSRQPSDSSVDKFVLRDEATEPGDQENKPCRIKGDI
GRSNDDDSAPLVHCVRLLSASFLLTGGKNVLVPDRDVRVSVKALALSCVGAAVALHPESF
FSKLYKVPLDTTEYPEEQYVSDILNYIDHGDPQVRGATAILCGTLICSILSRSRFHVGDW
MGAIRTLTGNTFSLVDCIPLLRKTLKDESSVTCKLACTAVRHCVMSLCSSSYSELGLQLI
IDVLTLRNSSYWLVRTELLETLAEIDFRLVSFLEAKAENLHRGAHHYTGLLKLQERVLNN
VVIHLLGDEDPRVRHVAAASLIRLVPKLFYKCDQGQADPVVAVARDQSSVYLKLLMHETQ
PPSHFSVSTITRIYRGYNLLPSITDVTMENNLSRVIAAVSHELITSTTRALTFGCCEALC
LLSTAFPVCIWSLGWHCGVPPLSASDESRKSCTVGMATMILTLLSSAWFPLDLSAHQDAL
ILAGNLLAASAPKSLRSSWASEEEANPAATKQEEVWPALGDRALVPMVEQLFSHLLKVIN
ICAHVLDDVAPGPAIKAALPSLTNPPSLSPIRRKGKEKEPGEQASVPLSPKKGSEASAAS
RQSDTSGPVTTSKSSSLGSFYHLPSYLKLHDVLKATHANYKVTLDLQNSTEKFGGFLRSA
LDVLSQILELATLQDIGKCVEEILGYLKSCFSREPMMATVCVQQLLKTLFGTNLASQFDG
LSSNPSKSQGRAQRLGSSSVRPGLYHYCFMAPYTHFTQALADASLRNMVQAEQEHDTSGW
FDVLQKVSTQLKTNLTSVTKSRADKNAIHNHIRLFEPLVIKALKQYTTTTSVQLQKQVLD
LLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRESEAIIPNIFFFLVLLSYERYH
SKQIIGIPKIIQLCDGIMASGRKAVTHAIPALQPIVHDLFVLRGTNKADAGKELETQKEV
VVSMLLRLIQYHQVLEMFILVLQQCHKENEDKWKRLSRQIADIILPMLAKQQMHIDSHEA
LGVLNTLFEILAPSSLRPVDMLLRSMFVTPNTMASVSTVQLWISGILAILRVLISQSTED
IVLSRIQELSFSPYLISCPVINRLRDGDSNSALEEHSEGKQIKNLPEETFSRFLLQLVGI
LLEDIVTKQLKVEMSEQQHTFYCQELGTLLMCLIHIFKSGMFRRITAAATRLFRSDGCDG
SFYTLDSLNLRARSMITTHPALVLLWCQILLLVNHTDYRWWAEVQQTPKRHSLSSTKLLS
PQMSGEEEDSDLAAKLGMCNREIVRRGALILFCDYVCQNLHDSEHLTWLIVNHIQDLISL
SHEPPVQDFISAVHRNSAASGLFIQAIQSRCENLSAPTTLKKTLQCLEGIHLSQSGAVLT
LYVDRLLCTPFRVLARMVDILACRRVEMLLAANLQSSMAQLPMEELNRIQEYLQSSGLAQ
RHQRLYSLLDRFRLSTMQDSLSPSPPVSSHPLDGDGHVSLETVSPDKVWYIHLVKSQCWT
RSDSALLEGAELVNRIPAEDMSAFMMNSEFNLSLLAPCLSLGMSEISGGQKSPLFEAARE
VTLARVSDTVQQLPAVHHVFQSDLPAEPAAYWSKLNDLFGDAALYQSLTTLARALAQYLV
AVSKLPSHLHLPPEKEKDTLKFVVATLEALSWHLIHEQIPLSLDLQAGLDCCCLALQLPG
LWSVVSSAEFVTHACSLIHCVHFILEAVAVQPGEQLLSPERRTNTPKASREEEEEVDPNT
QNPKYITAACEMVAEMVESLQSVLALGHKRNSGVPAFLTSVLRNIVVSLARLPLVNSYTR
VPPLVWKLGWLPKPGGDFGTAFPEIPVEFLQEKEVFKEFIYRINTLGWTSRTQFEETWAT
LLGVLVTQPLVMEQEESPPEEDTERTQINVLAVQAITSLVLSAMTVPVAGNPAVSCLEQQ
PRNKPLKALDTRFGRKLSIIRGIVEQEIQAMVSKRENIATHHLYQAWDPVPSLSPATTGA
LISHEKLLLQINPERELGSVSYKLGQVSIHSVWLGNSITPLREEEWDEEEEEEADAPAPS
SPPTSPVNSRKHRAGVDIHSCSQFLLELYSRWILPSNSARRTPAILISEVVRSLLVVSDL
FTERNQFELMYVTLTELRRVHPSEDEILAQYLVPATCKAAAVLGMDKVVAEPVSRLLEST
LRSSHLPSRVGALHGILYVLECDLLDDTAKQLIPVISDYLLSNLKGIAHCVNIHSQQHVL
VMCATAFYLIENYPLDVGPEFSASIIQMCGVMLSGSEESTPSIIYHCALRGLERLLLSEQ
LSRLDAESLVKLSVDRVNVHSPHRAMAALGLMLTCMYTGKEKVSPGRTSDPNPAAPDSES
VIVAMERVSVLFDRIRKGFPCEARVVARILPQFLDDFFPPQDIMNKVIGEFLSNQQPYPQ
FMATVVYKVFQTLHSTGQSSMVRDWVMLSLSNFTQRTPVAMATWSLSCFFVSASTSPWVA
AILPHVISRMGKLEQVDVNLFCLVATDFYRHQIEEELDRRAFQSVFEVVAAPGSPYHRLL
TCLRNVHKVTTC
NT seq
9399 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccctggaaaagctgatgaaggccttcgagtccctcaagtccttccagcagcag
cagcagcagcagcagcagcaacagccgccgccaccgccgccgccgccgccgcctcctcct
cagcttcctcagccgccgcaggcacagcagatgctgcctcagctgcagccacccccgccg
ccgcccccgccgccaccctgcccggctgtggctgaggagccgctgcaccgaccaaagaaa
gaactttcagctaccaagaaagaccgtgtgaatcattgtctgacaatatgtgaaaacata
gtggcacagtctgtcagaaattctccagaatttcagaaacttctgggcatcgctatggaa
ctttttctgctgtgcagtgatgacgcagagtcggatgtcagaatggtggctgacgaatgc
ctcaacaaagttatcaaagctttgatggattctaatcttccaaggttacagctcgagctc
tataaagaaattaaaaagaatggtgcccctcggagtttgcgtgctgccctgtggaggttt
gccgagctggctcacctggttcggcctcagaaatgcaggccttacctggtgaaccttctg
ccgtgcctaagtcgaacaagcaagagacccgaggaatcagtccaggagaccttggctgca
gctgttcccaaaattatggcttctttcggcaattttgcaaatgacaatgaaattaaggtt
ttgttaaaggccttcatagcaaacctgaagtcaagctcccccaccattcggcggacagct
gctggatcagcagtgagcatctgccagcactcaagaaggacacagtatttctatagctgg
ctactaaatgtgctcttaggcttactggttcctgtcgaggaggaacactccaccctgctg
attcttggcgtgctgctcaccctgaggtatttggtgcccttgctgcagcagcaggtcaag
gatacaagcctgaaaggcagcttcggagtgacacggaaagaaatggaggtctctccttct
gcagagcagcttgtccaggtttatgaactgacgttacatcatacacagcaccaagaccac
aatgttgtgactggagccctggagctgttgcagcagctcttcagaacgcctccccccgag
cttctgcaagccctgaccacagtggggggcattgggcagctcaccgctgctaaggaggag
tctggtggccgaagccgtagtgggagtattgtggaacttatagctggagggggttcctca
tgcagccctgtcctttcaagaaaacaaaaaggcaaagtgctcttaggagaagaagaagcc
ttggaggatgactctgaatcgagatcggatgtcagcagctctgcctttgcagcctcagtg
aaggatgatatcagtggagagctggctacttcttcaggggtttccactccagggtcagca
ggtcacgacatcatcacagagcagccacggtcacagcacacgctgcaggcggactcagtg
gatctggccagctgtgacttgacaagctctgccactgatggggatgaggaggatatcttg
agccacagttccagccaggtcagcgccgtcccatctgaccctgccatggacctgaatgat
gggacccaggcctcctcgcccatcagcgacagctcccagactaccaccgaagggcctgat
tcagctgtcaccccttcagacagttctgaaattgtgttagacggtaccgacaaccagtat
ttgggcctgcagattggacagccccaggatgaagatgaggaagccacaggtgttcttcct
gatgcagcctcggaggccttcaggaactcttccatggcccttcaacaagcacatttattg
aaaaacatgagtcacagcaggcagccttctgacagcagtgttgataaatttgtgttgaga
gatgaagctactgaaccgggtgatcaagaaaacaagccttgtcgcatcaaaggtgacatc
ggacggtccaatgatgatgattccgcacctcttgtccattgtgtccgccttttatctgct
tcgtttttgctaacagggggaaaaaatgtgctggttccggacagggatgtgagggtcagc
gtgaaggccctggccctcagctgtgtgggagcagctgtggccctccacccggaatctttc
ttcagcaaactctataaagttcctcttgacaccacggaataccctgaggaacagtatgtc
tcagatatcttgaactacatcgatcatggagacccacaggttcgaggagccactgccatt
ctctgtgggaccctcatctgctccatcctcagcaggtcccgcttccacgtgggagattgg
atgggcgccattagaaccctgacaggaaatacattttctttggtggattgcattcctttg
ctgcggaaaacactgaaggatgagtcttctgttacatgcaagctggcttgtacagctgtg
aggcattgtgtcatgagtctctgcagcagcagctacagtgagttaggactgcagctgatc
atcgacgtgctgactctgaggaacagttcctattggctggtgaggacagagcttctggaa
acccttgcggagatcgacttcaggctggtgagctttttggaggcaaaagcagaaaactta
cacagaggggctcatcattatacagggcttttaaaactgcaagaacgagtgctcaataat
gttgtcatccatttgcttggggatgaagaccccagggtgcgacatgttgctgcagcatca
ttaattaggcttgtcccaaagctgttttataaatgtgaccaaggacaagctgatccagta
gtggccgtggcaagagatcaaagcagtgtttacctgaaacttctcatgcatgagacgcag
cctccatctcatttctccgtcagcacaataaccagaatatatagaggctataacctacta
ccaagcataacagatgtcactatggaaaataacctttcaagagttattgcagcagtttct
catgaactgatcacatcaaccacgagagcactcacttttggatgctgtgaagctttgtgt
cttctttccactgccttcccagtttgcatttggagtttaggttggcactgtggagtgcct
ccactgagtgcctcagatgagtctaggaagagctgtaccgttgggatggccacaatgatt
ctgaccctgctctcgtcagcttggttcccattggatctctcagcccatcaagatgctttg
attttggccggaaacttgcttgcagccagtgctcctaaatctctgagaagttcatgggcc
tctgaagaagaagccaacccagcagccaccaagcaagaggaggtctggccagccctgggg
gaccgggccttggtgcccatggtggagcagctcttctcccacctgctgaaggtgatcaac
atttgtgcacatgtcctggacgacgtggctcctggacctgcaataaaggcagccttgcct
tctctaacaaatcccccttctctaagtcccatccgacgaaaggggaaggagaaagaacca
ggagaacaagcatctgtaccgttgagtcccaagaaaggcagtgaggccagtgcagcttct
agacaatctgatacctcgggtcctgttacaacaagtaaatcctcatcactggggagtttc
tatcatcttccttcatacctcaaactgcatgatgtcctgaaagctacgcacgctaactac
aaggtcaccttggatcttcagaacagcacggaaaaatttggagggtttctccgctcagcc
ttggacgttctctctcagattctagagctggccacactgcaggacattgggaagtgtgtt
gaggagatcctaggatacctgaaatcctgctttagtcgagaaccaatgatggcaactgtt
tgtgttcaacaattgttgaagactctctttgggacaaacttggcctcccagtttgacggc
ttatcttccaaccccagcaagtcacaaggccgagcacagcgccttggctcctccagtgtg
aggccaggcttgtaccactactgcttcatggccccgtacacccacttcacccaggccctc
gctgacgccagcctgaggaacatggtgcaggcggagcaggagcacgacacctcgggatgg
tttgatgtcctccagaaagtgtctacccagttgaagacaaacctcacaagtgtcacaaag
agccgcgcagataagaatgctattcataatcacattcgtttgtttgaacctcttgttata
aaagctttaaaacagtacacgacaacaacatctgtgcagttacagaagcaggttttagat
ttgctggcgcagctggttcagttacgggttaattactgtcttctggattcagatcaggtg
tttattggctttgtattgaaacagttcgaatacattgaggtgggccagttcagggaatca
gaggcaatcattccaaatatctttttcttcttggtattactgtcttatgaacgctatcat
tcaaaacagatcattggaattcctaaaatcattcagctctgtgatggcatcatggccagt
ggaaggaaggctgtgacacacgccataccggctctgcagcccatagtccatgacctcttt
gtattaagaggaacaaacaaagctgatgcaggaaaagagcttgaaacccaaaaagaagtg
gtggtatcaatgttactgagactcatccagtaccatcaggtgttggagatgttcattctt
gtcctgcagcagtgccacaaggagaatgaagacaagtggaagcgactgtctcgacagata
gctgacatcatcctcccaatgttagccaaacagcagatgcacattgactctcatgaagcc
cttggagtgttaaatacattatttgagattttggccccttcctccctccgtccggtggac
atgcttttacggagtatgttcgtcactccaaacacaatggcatctgtgagcactgttcaa
ctgtggatatcaggaattctggccattttgagggttctgatttcccagtcaactgaagat
attgttctttctcgtattcaggagctctctttttctccatatttaatctcctgtccagta
attaataggctaagagatggggacagtaattcagcactagaagaacacagtgaagggaaa
caaataaagaatttgccagaagaaacattttcaaggtttctattgcaactggtgggtatt
cttttagaagacattgttacaaaacagctgaaggtggaaatgagtgagcagcagcatact
ttctattgccaagaactaggcactctgctaatgtgtctgatccacatcttcaagtctgga
atgttccggagaatcacagcagctgccaccagactgttccgcagtgatggctgtgacggc
agtttctacaccctggacagcttgaatttgcgggctcgttccatgatcaccacccacccg
gccctggtgctgctctggtgtcagatcctgctgcttgtcaaccacaccgactaccgctgg
tgggcagaagtgcagcagaccccgaaaagacacagtctgtccagcacaaagttacttagt
ccccagatgtctggagaagaagaggattctgacttggcagccaaacttggaatgtgcaat
agagaaatagtacgaagaggggctctcattctcttctgtgattatgtttgtcagaacctc
catgactccgagcacttaacgtggctcattgtaaatcacattcaagatctgatcagcctt
tcccacgagcctccagtgcaggacttcatcagtgctgttcaccggaactctgctgccagc
ggcctcttcatccaggcaattcagtctcgttgtgaaaacctttcagctccaaccactctg
aagaaaactcttcagtgcttggaagggatccatctcagccagtcgggagctgtgctcacg
ttgtatgtggacaggcttctgtgcacccctttccgtgtgctggctcgcatggtcgacatc
cttgcttgtcgccgggtagaaatgcttctggctgcaaatttacagagcagcatggcccag
ttgccgatggaagaactcaacagaatccaggaataccttcagagcagcgggctcgctcag
agacaccaaaggctctattccctgctggataggttccgtctctctaccatgcaagactca
cttagtccctctcctccagtctcttcccacccgctggacggggatgggcacgtgtcactg
gaaacagtgagtccggacaaagtctggtacattcatcttgtcaaatcgcagtgttggacc
aggtcagattctgcactgctggaaggtgcagagctggtgaatcggattcctgctgaagat
atgagtgccttcatgatgaactcggagttcaacctaagcctgctagctccatgcttaagc
ctagggatgagtgaaatttctggtggccagaagagtccgctttttgaagcagcccgtgag
gtgactctggcccgcgtgagcgacaccgtgcagcagctccctgctgtccatcacgtcttc
cagtctgacctgcctgcagagccggcggcctactggagcaagttgaatgatctatttggg
gatgctgcactgtatcagtccctgaccactctggcccgggccctggcacagtacctggtg
gcagtctccaaactgcccagtcacttgcaccttcctcctgagaaagagaaggacaccctg
aaattcgtggtggcaacccttgaggccctgtcctggcatttgatccatgagcagattccg
ctgagtctggatctccaggcagggctggactgctgctgcctggccctgcagctgcctggc
ctctggagcgtggtctcctccgcagagtttgtgacccacgcctgctccctcatccactgt
gtgcacttcatcctggaggccgttgcagtgcagcctggagagcagcttcttagtccagaa
agaaggacaaataccccaaaagcctccagagaggaggaggaggaagtagatccaaacaca
cagaatccgaagtatatcaccgcagcctgtgagatggtggcagaaatggtggagtctctg
cagtcggtgttggctttgggtcataaaaggaatagcggcgtgccggcgtttctcacgtca
gtgctcaggaacatcgttgtcagcctggcccgcctgccccttgtcaacagctacacacgt
gtgccgccactggtgtggaagcttggatggttacccaaaccgggaggggattttggcaca
gcattccctgagatccccgtggagttcctccaggaaaaggaagtctttaaggagttcatc
taccgcatcaacacactaggctggaccagtcgtactcagtttgaagaaacttgggccacc
ctccttggtgtcctggtgacgcagcccctcgtgatggagcaagaggagagcccaccagaa
gaagacacagagaggacacagatcaacgtcctggccgtgcaggccatcacctcactggtg
ctcagtgcaatgaccgtgcctgtggccggcaacccagctgtgagctgcttggagcagcag
ccccggaacaagcctctgaaagctctggacacgaggtttgggaggaagctgagcattatc
agagggattgtagagcaagagattcaagcaatggtttcaaagagagagaacatcgccacc
catcatttataccaggcgtgggatcctgtcccttctctgtccccggctactacaggtgcc
ctcatcagccacgagaagctgctgctgcagatcaaccccgagcgggagctggggagcgtg
agctacaaactcggccaggtgtccatacactctgtgtggctggggaacagcatcacaccc
ctgagggaggaggaatgggacgaggaggaggaggaggaggccgacgcccctgcaccttca
tcaccacccacatctccagtcaactccaggaaacaccgggctggagttgacatccattcc
tgttcgcagtttttacttgagttgtacagccgctggatcctgccatccaactcagccagg
agaaccccagccatcctgatcagtgaggtggttcgatcccttctggtggtctcagacttg
ttcactgagcgcaaccagtttgagctgatgtatgtgacgctgacagaactgcgaagggtg
cacccttcagaagacgagatcctcgctcagtacctggtgcccgccacctgcaaggcagct
gccgtccttgggatggacaaggtcgtggcggagcctgtcagccgcctgctggagagcacg
ctcaggagcagccacctgcccagcagggtcggagccctgcacggcatcctctatgtgctg
gagtgcgacctgctggacgatactgccaagcagctcatcccagtcatcagcgactatctc
ctctccaacctgaaagggatcgcgcactgcgtgaacattcacagccagcagcacgtactg
gtcatgtgtgccactgcgttttacctgattgagaactatcctctggacgtggggccggaa
ttttcagcatccataatacagatgtgtggggtgatgctgtccggaagtgaggagtccact
ccctctatcatttaccactgtgccctcagaggcctggagcgcctcctgctctctgagcag
ctctcccgcctggatgcagaatccctggtcaagttgagtgtggacagagtgaacgtgcac
agcccgcaccgggccatggcggctctgggcttgatgctcacctgcatgtacacaggaaag
gagaaagtcagtccgggtagaacttcagaccctaatcctgcagccccagacagcgagtcg
gtgattgttgctatggagcgggtgtctgttctttttgataggatcaggaagggctttcct
tgtgaagccagagtggtggcgaggatcctgccccagtttctagacgacttcttcccaccc
caggacatcatgaacaaagtcatcggagagtttctgtccaaccagcagccatacccccag
ttcatggccaccgtggtgtataaggtgtttcagactctgcacagcaccgggcagtcatcc
atggtccgggactgggtcatgctgtccctctccaacttcacgcagaggaccccagtcgcc
atggccacatggagcctctcctgcttctttgtcagcgcatccaccagcccgtgggttgcg
gcgatcctcccacatgtcatcagcaggatgggaaagctggagcaggtggacgtgaacctt
ttctgcctggttgccacagacttttacagacaccagatagaggaggagctcgaccgcagg
gccttccagtctgtgtttgaggtggttgcagctccaggaagcccatatcaccggctgctg
acttgtttacgaaatgtccacaaggtcaccacctgctga
DBGET
integrated database retrieval system
