Rhinopithecus roxellana (golden snub-nosed monkey): 104679613
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Entry
104679613 CDS
T03989
Symbol
SPG11
Name
(RefSeq) spatacsin isoform X1
KO
K19026
spatacsin
Organism
rro
Rhinopithecus roxellana (golden snub-nosed monkey)
Pathway
rro04142
Lysosome
rro05014
Amyotrophic lateral sclerosis
rro05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
rro00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
104679613 (SPG11)
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
104679613 (SPG11)
05022 Pathways of neurodegeneration - multiple diseases
104679613 (SPG11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rro03400
]
104679613 (SPG11)
DNA repair and recombination proteins [BR:
rro03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
104679613 (SPG11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spatacsin_C
Motif
Other DBs
NCBI-GeneID:
104679613
NCBI-ProteinID:
XP_010383532
UniProt:
A0A2K6RCQ3
LinkDB
All DBs
Position
5:complement(31638569..31742586)
Genome browser
AA seq
2487 aa
AA seq
DB search
MEPTGDSREVSAGVTRPSVSRSVHRACPRHNQVPAKMPGSNGRAKMAAEEGAAPAASAGG
SWGAAAMERVLPMLLVPVPAEAMGQLGSRAQLHTQQEALGSLTAAGSLQVLSLAPGSRGR
GRCCLEGPFWHFIWEDSRNSSTPTDKPKLLALGENYELLIYEFNLKDGRCDATILYSYSG
EALQKLIEDQDISISLLSLRILSFHNNTSLLFINKCIILHIIFPERDAAIRVLNCFTLPL
PAQAVDMIIDTQLCRGILFVLSSLGWIYIFDVVDGTYVAHVDLALHEEDMCNEQQQEPAK
ISSFTSLKVSQDLDVVVIVSSSNSAIALNLNLYFRQHPGHLLCERTLEDLPIQGPKGIDE
DDPVNSAYNMKLTKFSFQIDRSWKAQLSSLNETIKNSKLEVSCCAPWFQDILHSESPESG
NHSTGVQSWAFIPQDIMHGQYNFLRKDHTKTSDPGRSWKIMHISEQEEPIDLKCVSVTGF
TALFTWEVERMGYTITLWDLENQGMQCFSFGRKCIPVDSSGEQQLCFVLTEKGLSLILFG
LTQEEFLNRLMIHGSASTVDILCHLNGWGRCSIPIHALEAGIENRQLDTVNFFLKSKENL
FNPSSKSSVSDQFDHFSSHLYLRNVEELMPALDLLCSAIRESYSEPQSKHFSEQLLNLTL
SFLNNQIKELFIHTEELDEHLQKGVNILTSYINELRTFMIKFPWKLTDAVDEYDVHENVP
TVKESNIWKKLSFEEVIANAILNNRIPEAQTFFRIDSHSAQKLEELIGIGLNLVFDNLKK
NNIKEASELLKNMGFDVKGQLLKICFYTTDKNIRDFLVEILKEKNYFSEKEKRTIDFVHQ
VEKLYLGHFQENLQIQSFPRYWIKEQDFFKHKSVLDSFLKYDCKDEFNKQDHRIVLNWAL
WWDQLTQESIILPRISPEEYKSYSPEALWRYLTARHDWLNIILWIGEFQTQHSYASFQQN
KWPLLTIDVINQNTSCNNYMRNEILDKLARNGIFLASELEDFECFLLRLSRIGGVIQDTL
PVQNYKTKEGWDFHSQFILYCLEHSLQHLLYVYLDCYKLSPENCPFLEKKELHEAHPWFE
FLVQCRQVASNLTDPKLIFQASLANAQILIPTNQASVSSMLLEGHTLLALATTMYSPGGV
SQVVQNEENENCLKKVDPQLLKMALTPYPKLKTALFPQCTPPSVLPSDITLYHLIQSLSP
FDPSRLFGWQSANTLAIGDAWSHLPHFSSPDLVNKYAVVERLNFAYYLHHGRPSFAFGTF
LVQELIKSKTPKQLIQQVGNEAYVIGLSFFHIPSVGAACVCFLELLGLDSLKLRVDMKVA
NIILRYKCRNEDAQYSFIRESVAEKLSKLADGEKATTEELLVLLEEGTWNSIQQQEIKRL
SSESSSQWALVVQFCRLHDMKLSISYLRECAKANDWLQFIIHSQLHNYHPAEVKSLIQYF
SPVVQDHLRLAFENLPLVPTSKMDISQVCNKSSQELQGSKEVMTDLFEILLQCSEEPDSW
HWLLVEAVKQQAPILSVLASCLQGASAISCLCVWIITSVEDSVATEAMGYIQDSIEDHTW
NLEDLSVIWRTLLTRQKSKTLIRGFQLFFKDSPLLLVMEMYELCMFFKNYKEAEAKLLEF
QESLEILNTAATKVHPVIPAMWLEDQVCFLLKLMLQQCKTPYELGKLLQLFVEREHLFSD
GPDVKKLYVLCQILKDTSIAINHIIITCYSIENFQHECKSILERLQTDGQFALARRVAEL
AELPVDNLVIKEITQEMQTLKHIEQWSLKQARIDFWKKCHENFKKNSISSKAASSFFSTQ
AHVACEHPAGWSTIEERHLLLTLAGHWLAQEDVVPLDKLEELEKQIWLCRITQHTLGRNQ
EETEPKFSRQISTSGELSFDSLAREFSFSKLAALNTSKYLELNSLPSKETCENRLDWKEQ
ESLNFLIGRLLDDGCVHEASRVCRYFHFYNRDVALVLHCRALASGEASMEDLHPEIHALL
QSAELLEEEPDIPLRRVHSTSSLDSQKFVTVPSSDEVVTNLEVLTSKCLHGKNYCRQVLC
LYDLAKELGCSYTDVAAQDGEAMLREILASQQPDRCKRAQAFISTQGLKPDTVAELVAEE
VTRELLTSSQGTGHKQMFSPTEESQTFLQLTTLCQDHTLVGMKLLDKISSVPHGELSCTT
ELLILAHHCFTLTCHMEGIIRVLQAARMLTDNHLAPSEEYGLVVRLLTGIGRYNEMTYIF
DLLHKKHYFEVLMRKKLDPSGTLKTALLDYIKRCRPGDSEKHNMIALCFSMCREIGENHE
AAARIQLKLIESQPWEDSLKDGHQLKQLLLKALTLMLDAAESYAKDSCVRQAQHCQRLTK
LITLQIHFLNTGQNTMLINLGRHKLMDCILALPRFYQASIVAEAYDFVPDWAEILYQQVI
LKGDFNYLEEFKQQRLLKSSIFEEISKKYKQHQPTDMAMENLKKLLTYCEDVYLYYKLAY
EHKFYEIVNVLLKDPQTGCCLKDMLAG
NT seq
7464 nt
NT seq
+upstream
nt +downstream
nt
atggaaccgaccggagacagccgagaggtctccgcgggagtcacgaggccgagcgtgagc
cgctccgtacaccgcgcatgcccacgacacaatcaggttccggcgaaaatgcccggaagt
aacggccgggccaagatggctgcagaggagggggccgcgcctgctgcttccgccggcggt
agctggggcgccgcggccatggagcgggttctaccgatgctgttggtaccggtccccgcc
gaggcgatggggcagctgggctcccgggcgcagctgcacacacagcaggaggctctgggg
agcctgacggctgcgggcagcctccaggtgctttctttggcgcctggcagccggggccgg
ggtcgctgctgcctggagggccccttctggcactttatatgggaggattctcgtaacagc
agcacaccaactgacaagcccaaactgctcgctcttggtgaaaattatgaactgcttatc
tatgaatttaatttgaaagatggaagatgtgatgcaaccattttgtatagctatagtggg
gaggcattgcaaaagctcattgaagatcaagatatcagtatttccttattgtctttgaga
atcctgtcatttcacaataacacgtcgttattgttcatcaacaaatgcatcatcctacat
attatatttcctgaaagagatgctgcaattagagtactcaactgtttcacactacccttg
cctgcacaggcagtggacatgattattgacacacagctctgcagaggaattctttttgtt
ttgagtagtttaggctggatctacatttttgatgttgtggatggtacgtatgtagctcat
gtggatttagcacttcacgaagaagatatgtgtaatgagcagcaacaggagccagccaag
atttcttcatttacttcactgaaagtgtctcaagacctcgatgttgtagtgattgtcagc
tcatccaactctgcaattgctcttaacttaaatttgtatttcaggcaacacccgggacac
ctactgtgtgaaagaacactagaagaccttcctattcaaggacctaaggggatagatgaa
gatgatcctgttaactctgcctacaacatgaaactgaccaagttttctttccaaattgat
aggtcgtggaaagcccagctatcatcattgaatgaaacaataaagaactccaaactggag
gtttcctgttgtgctccatggttccaggatattttgcattcagagtcacctgaatctggt
aaccacagtacaggtgtacagagctgggcttttattccacaggacataatgcacgggcag
tataattttctacggaaagatcataccaagaccagtgatccaggaagatcatggaagata
atgcacatcagtgaacaagaggaacccatagatcttaaatgtgtgtctgtgacaggattc
actgcactgtttacttgggaagtggaaaggatgggctataccattaccctctgggatttg
gagaaccagggcatgcagtgtttttcctttggcagaaagtgtattcctgtagacagtagt
ggagagcagcaactgtgctttgttttgacagagaaaggactctctctgattttgtttggt
ttgactcaagaagagtttttaaacagactcatgatccatggaagtgccagcactgtggac
attctttgtcatctcaatggctgggggaggtgctccattcccatacatgcactagaggct
gggatagaaaatcgtcagctggacacagtaaatttctttttgaagagcaaggaaaatctt
tttaatccatcctcaaaatcttctgtatctgatcagtttgatcacttttcatcccattta
tacttaagaaatgtggaagagctgatgccagcattggatttactttgctcagcaattaga
gaaagttattctgaaccccaaagcaaacacttttcagaacaattgcttaatcttacactg
tctttccttaacaaccaaataaaggagctttttattcacactgaagaactagatgaacat
ctgcaaaaaggagtgaatattttgactagctacattaatgaacttcgaaccttcatgata
aagtttccttggaagctaacagatgctgtagatgaatatgatgtacatgaaaatgtcccc
acagtaaaggagagcaatatatggaagaaactcagctttgaggaagttattgccaatgcc
attttaaacaacagaataccagaggcacagactttcttcaggattgatagtcattctgct
caaaaacttgaggagctgattggcataggcctaaatttggtctttgacaatttaaaaaag
aacaatataaaggaagcctctgaacttttgaagaatatgggttttgatgtaaaaggccaa
ttgctcaagatatgcttctacacaactgataaaaatatacgcgactttttggttgaaatt
ttaaaagaaaaaaattatttttctgaaaaagagaaaagaactatagacttcgtgcatcaa
gttgagaagctttatttgggacatttccaagaaaatctgcaaatccagtcatttcccagg
tattggataaaagaacaagattttttcaagcacaagtctgttttggactcattcctgaaa
tatgattgtaaagatgaatttaacaaacaggaccatagaattgtgttaaattgggctctg
tggtgggatcaactaacacaagaatccatcattctccccaggataagtccagaagaatac
aaatcatattcccctgaagccctctggagatacctcacagctcgccatgattggttaaac
attatcttatggattggagaatttcaaacccagcatagttatgcttcatttcagcagaac
aaatggccccttctgactattgatgttattaaccagaatacttcctgtaacaactacatg
aggaatgaaattttagataagctggccaggaatgggatttttctggcatctgaactggaa
gactttgaatgcttcctcctaagactgagccgtattggaggtgtaatacaggataccctc
cctgttcaaaactacaagaccaaagaaggttgggatttccattctcaattcattctctat
tgtttggagcacagtctgcagcatcttctttatgtctaccttgactgttacaaacttagt
cctgaaaattgtccctttttggaaaaaaaagagttacatgaagcacacccttggtttgaa
tttttagttcagtgtcgacaagttgccagtaatttaacagatcccaaactgatcttccag
gctagccttgcaaatgctcagattttgattcccaccaatcaggccagtgtaagcagtatg
ctattggaaggacataccctcctggcccttgctactacaatgtattctcctgggggtgtc
agccaggttgttcagaatgaagaaaatgaaaactgtttgaagaaagtggatccccagcta
ttgaagatggcattaactccttaccccaagctaaaaactgctctcttcccacagtgcact
cctcctagtgtcctgccatctgatattacactctaccaccttattcagtcattatcaccc
tttgatcctagcagattgtttggctggcagtctgctaacacactagctataggagatgca
tggagtcatctcccacatttctctagccctgacctggttaataaatatgctgtagtggaa
cgtctgaattttgcttattatttacatcatggacggccatcatttgcatttggtactttt
ctggtccaggaattaatcaagagcaagactcccaagcagctgatccagcaagtaggcaat
gaagcctatgtcatagggctctccttcttccacataccttcagtaggagctgcatgtgtt
tgtttcttagaattgcttggccttgacagcctgaaactcagagttgatatgaaagtggcc
aatatcattttgagatacaagtgcagaaatgaagatgcacagtacagctttatcagagag
tctgtagccgaaaaactatctaaactagctgatggtgaaaaggcaaccacagaagaattg
cttgttctcttagaagaaggtacatggaacagcattcagcaacaggaaataaagaggtta
tccagtgaatctagcagccagtgggcattagtggtacagttctgcaggctacacgatatg
aaactaagcatatcttaccttagagaatgtgccaaagcaaatgattggctgcagttcatt
attcacagccaactccacaactaccacccagcagaggtgaaatcccttatccagtacttc
agcccagtcgttcaagaccacttacggctggcttttgagaacttgcccttagtgcccacc
tccaaaatggacatcagtcaagtctgcaataagtcctcccaggaacttcagggaagcaaa
gaagtgatgaccgatttatttgaaattctgctccaatgctcagaggagccagactcctgg
cactggcttctggttgaagcagtgaaacaacaggcgcctatcctcagtgttctggcctca
tgtctccagggtgccagtgccatttcttgtctctgtgtttggatcatcacttctgtggag
gacagtgttgcaactgaagcaatgggatacattcaggactcgatagaggaccatacctgg
aaccttgaggatctttcagtcatctggagaacattattaacaagacagaagagcaaaact
ctcatcagaggtttccaacttttctttaaggattccccattactgttggtgatggagatg
tatgaactatgtatgttcttcaagaattataaagaagctgaagctaaacttctggagttt
caggagagccttgaaatacttaacacagcagccacaaaggtccaccctgtcatccctgct
atgtggctggaggatcaggtgtgtttccttttgaagcttatgctacagcagtgtaagacc
ccatatgagctggggaagcttttacagctctttgttgaaagagagcatctcttctctgat
ggtccagatgtgaaaaagctgtatgtcctttgccaaattttgaaggatacatccatagcc
attaatcatataattattacctgctacagcattgagaattttcagcatgaatgtaaatct
attttggaaagactgcagacagacgggcagttcgctttggccaggagggtagcagaatta
gctgagttacctgtggacaacttggttattaaagagataacacaggaaatgcagactcta
aaacacattgaacagtggtcactaaaacaagcaagaattgacttctggaaaaaatgccat
gagaattttaagaaaaattcaatttcaagcaaagcagcttcttcctttttctcaactcag
gcccatgtggcatgtgagcacccagctggatggagcaccattgaggaacgccatctgctg
ctcactttggcagggcactggcttgcccaagaggacgtagtgcccttggacaagctggag
gagctggagaagcagatctggctctgccgcatcacccagcacactcttggaagaaatcag
gaggaaacagagcccaaattttctcgacagatctcaaccagtggtgaactttcctttgat
agtttagccagggagttttccttctccaagttggctgctctgaacacatcaaaatactta
gaacttaacagccttccatccaaagagacatgcgagaatagactggattggaaagagcag
gagtcactaaactttttgattgggcgcctactggatgatggctgtgtgcatgaagcaagt
agagtatgccggtattttcatttctataatcgagatgttgccttggtgttgcactgcaga
gcactggcctcaggagaagctagtatggaggatctgcacccggagatccatgctctccta
caaagtgctgagctgcttgaggaagaacccgacattcccctaaggagagtccacagcact
tcaagtctggatagtcagaagtttgtgacagtgccctccagtgatgaagtggtgactaac
ctggaagtgctgacaagtaaatgcctccatggaaaaaactactgtcgacaggtcctctgt
ctgtatgatcttgccaaggagttgggctgttcctacacagatgttgctgctcaggatggt
gaagccatgctccgggaaatcttggcctctcagcagcctgaccgatgcaaacgagcccag
gccttcatcagcacacagggccttaagccagatactgtggctgaactcgtggcagaagag
gtgacacgggagctgcttacttcatcacagggaacaggacataagcagatgttcagccca
acagaggaaagccagacatttcttcagctgaccactctgtgtcaagaccacacattggta
ggcatgaagttgttggataagatttcctccgttccccatggggaattgtcttgcaccaca
gagctcctgatcctggcccatcattgcttcaccctgacgtgccacatggagggcatcatc
cgagtcctacaggccgcccggatgctcacagataaccacctggcccccagtgaggagtat
ggactggtggtacggctcctcactggcattggaaggtacaatgagatgacatacatattt
gatttgctgcataaaaagcactactttgaagtgctgatgaggaagaagttggatccgagt
ggtaccctgaagacagccctgctggactacatcaaacgctgccgtcctggagacagtgag
aagcacaatatgattgccctgtgcttcagcatgtgccgggagattggcgagaaccacgag
gcagctgcccgcatccaactgaaattgattgagtctcagccctgggaggacagtctcaag
gatgggcaccagctgaagcaactgctgctgaaggccctgactctgatgctggatgcagca
gagagttatgccaaggactcttgtgtgcgacaggcccagcactgtcagcggctcaccaag
ttgataactctgcagattcactttctgaacactggccagaacacaatgctcatcaacttg
ggccgccacaagctaatggactgtattctggccctacctcggttctaccaggcttctatt
gtggctgaggcctatgattttgttccagattgggctgaaattttataccagcaagtgata
cttaaaggagactttaattacttggaagaatttaagcagcaaaggttattaaagtccagt
atatttgaagagatttccaaaaaatataaacaacatcagcctactgacatggccatggaa
aacctgaagaaattactcacatattgtgaagatgtttacctgtattacaagttggcatat
gaacacaagttttatgaaattgtaaatgtgcttctgaaggaccctcagacaggttgctgt
ctaaaggacatgctagcaggttag
DBGET
integrated database retrieval system
