Rhinopithecus roxellana (golden snub-nosed monkey): 115892825
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Entry
115892825 CDS
T03989
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
rro
Rhinopithecus roxellana (golden snub-nosed monkey)
Brite
KEGG Orthology (KO) [BR:
rro00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rro03016
]
115892825
Enzymes [BR:
rro01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
115892825
Transfer RNA biogenesis [BR:
rro03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
115892825
Prokaryotic type
tRNA splicing ligases
115892825
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
115892825
NCBI-ProteinID:
XP_030771154
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All DBs
Position
13:complement(16412332..16434371)
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AA seq
442 aa
AA seq
DB search
MSRSYNDELQFLEKISKNCWRIKKGFVPNMQVEGVFYVNDALEKLMFEELRNACRGGGVG
GFLPAMKQIGNVAALPGIVHRIIEEEMARSLGVSTEREEERTADLEEALEMGVDWSLREG
YAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNEYAA
KKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIASPEG
QDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVV
DGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETF
GTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVN
TCHDAGISKKAIKLRPIAVIKG
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgcagctataatgatgagctgcagttcttggaaaagatcagtaaaaactgctgg
aggatcaagaagggcttcgtgcccaacatgcaggttgaaggcgttttctacgtgaatgat
gctctggagaaattgatgtttgaggaattaaggaatgcctgtcgaggtggtggtgttggt
ggcttcttgccagccatgaaacagattggcaacgtggcagccctgcctggaattgttcat
aggatcattgaagaagaaatggcaaggagtttaggggttagcactgagcgggaggaagag
aggacagcagacttggaggaggccttggagatgggggtggactggtccttaagagaaggg
tatgcctgggctgaagacaaggagcactgtgaggagtacggaaggatgctgcaagctgac
cccaataaggtttctgcaagagctaagaaaagaggccttcctcagttggggaccctggga
gcaggcaaccattatgcagaaatccaggttgtggatgagattttcaatgagtacgctgct
aaaaaaatgggcatcgaccataagggacaggtgtgtgtgatgatccacagtggaagcaga
ggcttgggccaccaagtagccacagatgcactggtagctatggagaaggccatgaagaga
gacaagattatagtcaatgatcggcagttggcttgtgctcgaatcgcttcgccagaaggt
caggactacctgaagggaatggcagcagctgggaactatgcctgggtcaaccggtcttcc
atgaccttcttaacccgtcaggcttttgccaaggtcttcaacacaacccctgatgacttg
gacctgcacgtgatctatgatgtttctcacaacatcgccaaagtggagcagcatgtagtg
gacgggaaggagcggacactgttagtacacaggaagggatccacgcgcgctttccctcct
caccatccgctcattgctgttgattaccaactcactggacaaccagtgctcattggtggc
accatgggaacctgtagttatgttcttactggcactgaacagggcatgactgagaccttt
ggaacaacctgtcatggagcgggccgtgcattgtcccgagcaaaatctcgacgtaattta
gatttccaggatgttttagacaaattggcagatatgggaattgcaatccgtgttgcctca
cccaaactggttatggaagaggctcctgagtcctataagaatgtgacagatgtggtgaat
acctgccatgatgctggaatcagcaagaaagccattaaactgagaccaattgctgtgatc
aaaggatag
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