Rhizobium rosettiformans: D4A92_17495
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Entry
D4A92_17495 CDS
T08393
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rros
Rhizobium rosettiformans
Pathway
rros03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rros00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
D4A92_17495 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rros03400
]
D4A92_17495 (mfd)
Enzymes [BR:
rros01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D4A92_17495 (mfd)
DNA repair and recombination proteins [BR:
rros03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
D4A92_17495 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
RecG_dom3_C
SecA_DEAD
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
QRF53104
LinkDB
All DBs
Position
complement(3564259..3567765)
Genome browser
AA seq
1168 aa
AA seq
DB search
MPLIDVKRIVGAQSALTLSHVPDGMDAFILAELAREGKPVAYVVSDGQRLQNLEQTLSFA
APDIPVLSLPAWDCLPYDRVSPSADVSARRLAALSGLIALYLNPHPAIVLVTVNAMLQKV
APADVIDSLGFSAKPGNQVRMDDIAARLERNGFDRVATVREVGEFAVRGGILDVFVPGAE
EPVRLDFFGDTLESIRSFDPASQRTIAQVRSLDLNPMSEVTLTPESISRFRKNYLSLFGA
ATRDDALYAAVSEGRRYAGMEHWLPMFYDKLETTFDYLRGFRMVTDHTVREAAEERAKLI
RDYYEARLNSATPGKGHLAQGTPYKPVPPERLYLGASEFGANLDAFDPIRITPFAEHGGE
SRVVIEVDARPTPRWAKSANEASEDGNRANVFGQAVTYIADKRAAGAKVVVSGWSEGSLD
RLLQVLNEHGLERLVPVAALKDVDKLKKGEAGTAVLSLEGGFETNGFVIIGEQDILGDRM
VRRSKRRKRAADFISEVAGIDEGSIVVHAEHGIGRFVGLRTIEAAGAPHACLELQYADEA
KLFLPVENIDLLSRYGGEATEVQLDKLGGGAWQMRKAKLKKRLLDMAGALIRIAAERMTR
TAPVLTTQEGLYDEFAARFPYDETEDQETAIESVRSDLGAGRPMDRLVCGDVGFGKTEVA
LRAAFIAAMNGIQVAVVVPTTLLARQHFKTFSERFRGLPIRVQQASRLVGTKELNLVKKE
VAEGKTDIVVGTHALLGTGVNFANLGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSATP
IPRTLQLAMTGVRELSLITTPPVDRMAVRTFISPFDPLVIRETLMREHYRGGQSFYVCPR
LADLADVKSFLDENVPELKVAIAHGQMAAGELEDIMNAFYEGRYDVLLSTTIVESGLDVP
TANTLIVHRADMFGLAQLYQIRGRVGRSKVRAFALLTLPVNKVLTAGAERRLKVLQSLDT
LGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEVKGVDEVVDTGWS
PQIQVGTSVMIPENYVPDLHLRMALYRRLGELDDLREIDGFGAELIDRFGPMPIEVQHLL
KVVYIKALCRVANVEKLEAGPKGVVVQFRSKQFPNPAALVGYIAKQGSMAKIRADHSVFL
TRDLPTPEKRLAGAAVVMTQLAELAKAS
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atgcccctgatcgatgtgaagcggattgtcggcgcacaatctgcgctgacgctctcccat
gtgcccgacggcatggatgccttcatcctggccgagctggcgcgtgaagggaaaccggtc
gcctatgtggtgtccgacggacagcggctgcagaacctcgagcagacactgagctttgct
gcgcccgacattccggtcttaagcctgcctgcctgggactgtctgccttacgaccgcgtc
tcgccgtccgctgatgtgtcggcccggagattggcggcactgtcgggtctgattgcgctc
tatctcaatccgcatcctgccatcgtgctggtgacggtcaatgccatgctgcagaaggtg
gcaccagctgatgtgatcgacagcctcggcttttcggccaagcccggcaatcaggtgcgc
atggatgacattgccgcacgtctggagcgcaacggtttcgaccgggttgcgactgtgcgg
gaggtcggtgaattcgccgtgcgcggcggcattctcgatgtcttcgtgcccggtgcggaa
gagcccgtgcgtctcgacttctttggcgatacgctcgaaagcatccgctccttcgatccg
gcaagccagcgcacgatcgcccaggtccgttcgcttgatctcaacccgatgagcgaggtg
acactgacgccggagagcatcagccggtttcgcaagaactatctctcgctcttcggcgcc
gccacccgcgatgacgcgctctatgccgccgtctccgaggggcgccgctatgccggcatg
gagcactggttgcccatgttctacgacaagctggagacgaccttcgattatctgcgcggc
ttccgtatggtcaccgaccataccgtgcgtgaggcagccgaagagcgcgccaagctgatc
cgcgactactacgaggcgcgccttaactcggcgacgcccggcaagggccatctcgcccaa
ggcacgccgtacaagccggttccgccggagcggctctatctcggtgccagcgagttcggc
gccaacctcgacgctttcgacccgatccggatcaccccctttgccgaacacgggggtgaa
agccgtgttgtcatcgaggtggatgcccggccgacgccgcgctgggcaaagagtgccaac
gaagccagcgaagacggcaatcgcgccaatgtctttggccaggcggtcacctatatcgcc
gacaagcgcgctgctggcgccaaggtcgtcgtctccggctggtcggaaggttcgctcgat
cgcctgctgcaggtgctcaatgagcacggcctggagcggcttgtgccggtcgcggccctc
aaggatgtcgacaagctgaagaagggcgaggcgggcaccgccgtcctcagcctcgaaggc
ggcttcgagaccaacgggttcgtcatcatcggcgaacaggacattctcggcgaccgcatg
gtccgccgctccaagcgccgcaagcgcgccgccgatttcatctctgaagttgcgggcatc
gatgaaggttcgatcgtcgttcacgccgaacatggcatcggccgtttcgtcggtttgcgc
accatagaggccgccggcgccccgcatgcctgcctcgaactgcaatatgccgatgaggcc
aagctcttcctgccggtcgaaaacatcgatctgctctcccgctatggcggcgaggcgacg
gaagtgcaactcgacaagctgggcggtggcgcctggcagatgcgcaaggcgaagctcaag
aagcgcctgctcgacatggcaggcgccttgatacgcattgccgccgaacgcatgacacgg
acggctccggtattgaccacacaggaaggtctctacgacgagttcgccgcccgtttcccc
tatgacgagacggaagatcaggagaccgcgattgaatccgtccgctcggacctcggcgcc
ggccgtcccatggaccgcctcgtctgcggcgatgtcggattcggcaagacggaagtggcg
cttcgtgccgcattcatcgccgcgatgaacggcatccaggttgctgtcgtcgtgccgacc
acgcttctggcccgccagcatttcaagaccttttccgaacgcttccgcggcctgccgatc
cgcgtccagcaggcctcgcgccttgtcggcaccaaggagctgaacctcgtcaagaaggaa
gtcgccgaaggcaagaccgatatcgtcgtcggcacccatgcgctgctcggcaccggtgtc
aatttcgccaatctcggtctgctgatcatcgacgaggagcagcatttcggcgtcaagcac
aaggagcggctgaaggagctgaagtcggacgtgcacgtcctgacgctttcggccacgccc
atcccgcgtaccctgcagcttgccatgaccggggtgcgcgaactctcgctgatcaccacg
ccgccggtcgaccgcatggcagtgcgcaccttcatttcgcccttcgatccgctcgtcatc
cgcgagacgctgatgcgcgagcattatcgtggcggacaaagcttttatgtctgcccgcgc
cttgccgatctcgcggatgtgaaaagtttcctcgacgagaacgtgccggaactgaaggtg
gcgatcgcccatggccagatggctgccggcgagctcgaagacatcatgaacgccttctac
gagggccgctatgacgtgctgctctcgacgaccattgtcgaatccggcctcgatgtgccg
acagccaatacgctgatcgtccaccgtgccgacatgtttggcctcgcccagctctaccag
atccgtggccgtgtcggtcgctccaaggtccgcgccttcgcgctcctgacgctcccggtc
aacaaggtgctgacggcgggtgccgaacggcgcctgaaggtcctgcagtcgctcgacacg
ctcggcgccggcttccagcttgccagccacgacctcgatatccgtggcgccggcaatctg
ctcggcgaggaacagtccggccatatcaaggaagtcggcttcgagctctaccagcagatg
ctggaagaggcggtcgccgaggtgaagggtgtcgatgaagtggtcgataccggctggtcg
ccgcagatccaggtcggcacctcggtcatgatcccggaaaactacgtgccggatctgcat
ctgcgcatggcactctatcgccgcctcggcgagctcgacgacctcagagagatcgacgga
ttcggcgccgaattgatcgaccgcttcggccctatgccgatcgaagtgcagcatctgctg
aaggtggtttacatcaaagcgctctgccgcgtggccaatgtcgaaaagctggaagccggg
cccaagggtgtcgtggttcagttccgcagcaaacagttccccaatccggcagcgctggtc
ggctatatcgccaagcagggcagcatggcaaagatcagagcggaccactcggtgttcctc
acccgcgacctcccaacgccggagaagcggctggcaggggctgcagtggtgatgacgcag
ctggcggagttggcgaaggcgagttga
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