Rickettsia rickettsii R: RRR_05385
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Entry
RRR_05385 CDS
T03663
Name
(GenBank) 5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
rrr
Rickettsia rickettsii R
Pathway
rrr03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rrr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RRR_05385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rrr03400
]
RRR_05385
Enzymes [BR:
rrr01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
RRR_05385
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
RRR_05385
DNA repair and recombination proteins [BR:
rrr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
RRR_05385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Ribosomal_S13
HTTM
IBR_1
Motif
Other DBs
NCBI-ProteinID:
AJG33400
LinkDB
All DBs
Position
959436..960257
Genome browser
AA seq
273 aa
AA seq
DB search
MPELPEVETLKNSLKDKLIGLIIENVELKRDNLRYKLSPLLATEILNTNILDVRRRAKYL
IIDFNNDYSLIVHLGMSGRFTLQSANYKTQKHDHVIFDLSNGEKLIFNDTRRFGMIYSFK
TDLLEKEFFNDLGIEPFSDLLTLEYLKDKLQTKKIPIKNLIMDNRVIVGVGNIYASESLH
LARIHPDKSGNDLRDDEIENLIKAIRDVLTKAITAGGTTLKDFVNGDNKPGYFTKQLKVY
GREGQSCLSCSSTIIKIKHSGRSTFYCKTCQYS
NT seq
822 nt
NT seq
+upstream
nt +downstream
nt
atgccggaacttcctgaagtagaaactcttaaaaactctctaaaagataagctaatcggg
ctcattatagaaaatgtagagttaaaaagagataatttacgttataagctatccccgctt
ttagctacagaaatcttaaatactaatatactggatgttaggcgtcgtgcaaaatactta
attatagattttaataatgattattctttaatagttcatctaggcatgagcggcagattt
actctgcaatctgctaattataaaactcaaaaacacgatcatgtgatttttgatttaagt
aacggcgaaaagttaattttcaacgatactagacgattcggtatgatttatagttttaag
actgatctcttagaaaaagaattttttaatgatttaggcatagagcctttttctgattta
ttgacgttagaatatctaaaagataagctacaaactaaaaaaataccaataaaaaacttg
attatggataatagagttatagtcggagtcggtaatatctatgcttccgaaagtctgcat
ttagctagaattcatccggataaatcaggtaacgatttaagggatgatgaaatagaaaat
ttaattaaagcgattagagatgtgttaactaaagctataactgccggcggtactactctt
aaagattttgtaaacggcgataacaaacctggttattttactaagcaacttaaggtttac
ggtagagagggacaaagttgtttaagctgctctagcactattatcaagataaagcattca
ggcagaagtactttttattgtaaaacttgccaatatagttaa
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