Roseiflexus sp. RS-1: RoseRS_0060
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Entry
RoseRS_0060 CDS
T00542
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rrs
Roseiflexus sp. RS-1
Pathway
rrs03420
Nucleotide excision repair
rrs03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rrs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RoseRS_0060
03430 Mismatch repair
RoseRS_0060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rrs03400
]
RoseRS_0060
Enzymes [BR:
rrs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RoseRS_0060
DNA repair and recombination proteins [BR:
rrs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RoseRS_0060
MMR (mismatch excision repair)
Other MMR factors
RoseRS_0060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
Peptidase_M78
UvrD_C_2
PDDEXK_1
AAA_11
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ABQ88503
UniProt:
A5UPF0
LinkDB
All DBs
Position
69077..72610
Genome browser
AA seq
1177 aa
AA seq
DB search
MSVRRQQIRAAACDVRRSYYERVGSDDLNHPLSLDTLVEEIWGLTVIRDVLAAGIQGKVE
PEHDVIRVQRDLSPTRQRFVIAHEIGHVHLEGLDAGPFRDTDETLDECAAGADDETAVRS
YNRRERREQEANLFALELLVPAEELWQAVQQADWSIESLAAQFAVSTDAIRAQLVNVCCL
DPLTPPDGSTVTRHTSFTPDPEQQAAVDAPLPLLLAAGPGTGKTRSIVAKYVSLVHQGVD
PASILALTFSNRAAEEMRERIIAALRQAAPRLAGRVEISTFHSWGLNILRIYGARLGLPA
DVRLLDTADLFLLLSKRLDDLRLAYFKDLREPTRHLVTIIQAISRIKDELWSPEEFARAA
EQEAERLIGQAEQDHPGASRKATEARERAVRRATALRELAQIYPRYEAILREAGALDYGD
LIVLPVRALHDPAIAADLRRRYHYLLVDEFQDINYASGELIRLLDGGRGRVWAVGDAWQS
IYRFRGASAANLDEFLHHYPTAQVRYLTRNYRSLQPILDASAAVMVSDPRAATRPLLQAQ
RTGGGHAVIELVAPHSQDEHTAIAHDILRRARSGRGRGLPRCAVQPWMLHCRKMRRALRR
PPLFIRRWRFHDHAVLCRTHEQASAIAAVLEAHGIPVDHPGNVFEASEVKDVLAICAQIG
STNSAGLLRALTMPDHRLDPNDLNLLVSLARQTQQALPRAARDPAVLAQLSETARQTLTR
LQTIVETLEREADVWHALTTYLFEQSQAMRQRLNRAARGEYAAQRELATLGQLIAIARNF
VRLATPEESGAPHFIAYIRALRAAGVQPRPLIGGQADAVRVMTVHAAKGLEFPIVYVPGL
QEGRFPARGNQRGLSLPAGLIRGSIEPEDQEERYLLYVAMTRARDRLVLSRALTRGNGER
AAERSSLLPGDGDGNGAPWIVRSVIGGATCPNPAPAMRLHDTPAPRMPLPASSIDLDGCK
RRFLYQYVYQLYDDLSPFLRMHQAIRECVRTLTEQARAGVLPADDDAVRSLVFGQLQRYE
LDTVLYAEDYATETLQHVQVVWNDLRSGRIAPERVDRRVLVRRPAGVIEVRIDREETQDG
VTRWVWVRPGAPRGNDHLSERMILYALARQEVGHPPDELAIAFTGTGETVRVTHAERVLA
NHTAKIDRLLEAMHERRWEPSFGSQCDTCPFNLICPV
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgagcgttcgccgacaacagatccgcgctgcggcttgtgatgtgcgccgctcctactat
gagcgcgtcggcagtgatgatctcaaccatccgctgtcgcttgatacccttgtagaggaa
atctggggattgacggtcatccgggatgtgctcgccgccggtattcaggggaaggtcgag
ccggaacacgacgtcatccgggtgcagcgcgatctttcaccgacccgtcagcgcttcgtg
attgcccacgagattggtcatgtgcacctcgaagggttggatgccggcccgttccgcgat
accgacgaaacgctcgatgagtgtgccgcaggcgccgacgatgagacggcggttcgttcg
tacaaccggcgcgagcgccgcgaacaggaggcgaacctgtttgcgcttgaattgctcgtg
ccggcggaggaactctggcaggcggttcagcaggcggactggagcattgagtcgcttgca
gcgcagtttgccgtctcaaccgatgccatccgcgcgcaactggtgaatgtctgctgtctc
gatccgctgacaccacccgacggatcgaccgttacccgacatacgtcgttcacgccggac
ccggagcaacaggcggcagtcgatgcgccgctgccgctgctgcttgcggctggaccgggt
accgggaagacgcgcagcattgtggcgaagtatgtgtcactggtgcatcagggggtcgat
ccggcatcgatcctggcgctgacgttttcgaacagggcggcggaggagatgcgcgagcgg
atcattgctgcactgcgtcaggcagcgccacgccttgccggacgtgtggagatcagtacg
tttcactcgtggggactgaatatcctgcgcatctacggggcgcgactggggttgccggcg
gatgtgcggcttctcgatactgccgatctctttcttctgctctcgaagcgcctggacgat
ctgcgcctggcgtatttcaaagacctgcgcgaaccgacccgtcatctggtgacgattatt
caggcgatcagccggatcaaggatgaactgtggtcgccggaagagttcgcgcgtgcggcg
gagcaggaagcggagcgtctgatcggacaggcggagcaggatcatcctggcgcttcgcgc
aaagccaccgaagcgcgcgagcgcgcggtgcgacgggcgaccgcgttacgcgaactggca
cagatctacccgcgctacgaagcgatcctgcgcgaggcgggcgcactggactatggcgat
ctgattgtgttaccggtgagggcgctgcacgatccggcaatcgctgccgatctccgtcgg
cgttaccactaccttctggtcgatgaatttcaggatatcaactacgcttcgggcgagttg
atccggctgctcgatggtggacgcggacgggtgtgggcggtcggcgatgcctggcagagc
atctatcgctttcgcggcgcatcggcggccaatctcgatgagttcctgcaccattacccg
acggcgcaggttcgctatctgacgcgcaactaccgctcgttgcaaccgatcctcgatgcc
agcgccgcagtgatggtcagcgatcctcgcgctgcaacccgtccgttgctgcaggcgcaa
cgcaccggcggcggtcacgcagttatcgaactagttgcaccgcacagtcaggatgaacat
acagcaattgcgcacgacattctgcgccgggcgcgatccggtcgaggcaggggattgccg
cgctgcgccgtgcaaccgtggatgctgcactgccggaagatgcgacgtgcactgcgtcgt
ccacccctgttcattcgtcgctggcgtttccacgaccatgcagtgctctgccgcacccac
gaacaggcgagcgcaattgctgctgtgctcgaagcgcacggcattccggtcgatcatccg
ggcaacgtgttcgaggcgtcagaggtgaaggatgtcctggcaatctgcgcccagattgga
tcgacgaacagcgccggtctgctgcgagcgttgacgatgcccgatcaccgtcttgatccc
aacgacctcaacctgcttgtcagtctggcgcgacagacgcaacaggcgcttccacgcgcc
gctcgcgatccggcggttcttgcgcagttgagtgaaaccgcccgacagacgctcacacgg
cttcagactatcgtcgaaacgctggagagagaagcggatgtctggcacgcgctgacgacc
tatctattcgagcagagtcaggcgatgcggcaacggttgaaccgcgctgcacggggtgag
tatgccgcacaacgggaacttgccacactcggtcagttgattgcgattgcgcgcaacttt
gtgcgtcttgcaacaccggaggagagcggtgcgccgcacttcatcgcctacattcgcgca
ttgcgcgctgccggtgtgcaaccacgaccgttgatcggcgggcaggcggatgccgtgcgg
gtcatgaccgtccacgctgcaaaggggctggagtttccaattgtgtatgtaccaggattg
caggagggacgcttcccggcgcggggcaatcagcgtggattgtcattgcctgccggtctt
attcgcggttcgatcgagcctgaagaccaggaggagcgctaccttctctacgtggcgatg
actcgcgcacgtgaccggttggtgctcagtcgcgcactgacgcggggcaatggcgagaga
gcagcggaacgttcttcgttgttacccggcgatggtgacgggaatggcgcaccctggatc
gttcgatcagtcatcggcggggcaacctgtccgaatccagcgcctgcgatgcggctgcac
gacacaccagcgccgcgtatgccgttaccggcttcgagtatcgatctcgacggttgcaaa
cggcgctttctgtatcagtacgtatatcagttgtacgacgatctttcgccgtttttacgt
atgcatcaggcaatccgcgaatgcgtcaggacgctgacggaacaggcgcgtgcgggtgtt
ctgcctgccgatgacgatgcagtacgatcgctggtattcggtcagttgcagcggtacgaa
ctcgacacggtgctctacgccgaagactatgccaccgagacgttacagcacgttcaggtg
gtgtggaatgacctgcgaagcgggcgaatcgcgcctgagcgggtagaccggcgcgtgctg
gtgcggcgaccggctggggtgatcgaagtgcggattgatcgagaggagacgcaggacgga
gtgacgcggtgggtatgggtgcggcccggtgcgccgcgtggcaatgatcatctctcggag
cgtatgatcctgtatgcgctggcgcgtcaggaggtgggtcatcctcctgatgaacttgcg
attgcctttacgggaacaggcgagacagtgcgggtcacgcacgctgagcgggtactggcg
aaccacacggcaaagatcgaccgtctgctcgaagcgatgcacgagcggcgctgggaaccg
tcgtttggttcacagtgcgacacctgccctttcaacctgatctgtccggtataa
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