Roseiflexus sp. RS-1: RoseRS_0905
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Entry
RoseRS_0905 CDS
T00542
Name
(GenBank) SMC domain protein
KO
K03546
DNA repair protein SbcC/Rad50
Organism
rrs
Roseiflexus sp. RS-1
Brite
KEGG Orthology (KO) [BR:
rrs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rrs03400
]
RoseRS_0905
DNA repair and recombination proteins [BR:
rrs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
RoseRS_0905
Archaeal homologous recombinant proteins
RoseRS_0905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
SMC_N
Phage_GP20
AAA_29
AAA_21
ATG16
Rad50_zn_hook
AAA_15
ABC_tran
zf-Di19
Vps5
Motif
Other DBs
NCBI-ProteinID:
ABQ89314
UniProt:
A5URR1
LinkDB
All DBs
Position
complement(1117623..1120691)
Genome browser
AA seq
1022 aa
AA seq
DB search
MIPRKLALQNFMCYREGLPPLEFDGMSIACLAGENGAGKSALLDAITWALWGEARLKSDD
DLVALGATEMMVELEFTLDGQDYRVIRRRIRGKRGGQSQLDFQVRDGNEWRSLTPGGIRE
TQQLIIRTLRMDYEMFANSAYLRQGRADEFTRKEPAKRKQVLADILGLSIYEELEGRAKE
RARSTEGQIRGLEGQIGELRRQAERYDLLVEEVHTAEERVADAMKRVEAARLALEEATAS
VQKLEQVRTIRDNLHTQTQRRRREREDQAQWLDRQMETQKRAESWIARRAEIEEGIRLLR
AAKAECDRLAALRDEYDHLQSRRAALAQALANAEHAIRSDLRVAETQVQTLRERAARRPK
LAAELQRLAAQLAEHPPIAEALSAARTRRATLTERLRRVNELLRRRTELESDIKLKHDSL
VATREEQKRTLRTLAEQLKHEARWRTELAEATAERARLEQEAAHLDTLRDDERALAEKIG
AIRAECETVKKQGDQINEKLRLLGPDLKVCPLCKSELGHDGIAHIQAEYERERQALRQQY
AAAKREADHLEAHLKRLRNDIRTIEARVNTLPDVQGRIARLESELAKCDVCRQQQIEAQR
LHDDVALRLLKNDYEPAAREELKRIDAEINALGSVDALEREIAAVERQVAALEDRSREQA
SVQAKIDGLQREIQQIDSEDPALHEQEQIVAALSAQLAQGDFAHTERAALADIDRQIAAL
GYSRERYDQAQADVQALVHWEEDLIRLQRAEEWLAENRDELARAAERLRQLDAQIAADEE
EVRSLDERLCDLAPAARARAEAAARLDELNHEVMARQKDLGERQADLRRAQEATSALAEA
EAHRQALLERKGLFDELTQAFGKKGIQAMLIETALPELEREANRLLSRMTDNQLHLTFET
QRDTKKGEVAETLDIKIADALGTRVYDAYSGGEAFRLDFAIRIALSKLLARRAGARLETL
IIDEGFGSQDARGRERLVEAIISVQHDFRRVLVITHIQELKDMFPVQIEIVKTPNGSVWN
IV
NT seq
3069 nt
NT seq
+upstream
nt +downstream
nt
atgatcccgcgcaaactggcactgcaaaactttatgtgttaccgcgaaggactgccgccg
ctcgagttcgatggcatgtcgattgcgtgcctggcaggcgaaaatggcgccggcaaatcg
gcgctgctcgacgccatcacatgggcgctgtggggcgaggcgcgcctgaagagcgatgat
gacctggtggcgcttggcgctactgagatgatggtggaactggagttcaccctcgatggg
caggattaccgggtcatccggcgtcgcattcgcgggaagcgcggcggtcagagccagctc
gatttccaggtgcgcgatgggaacgaatggcgctcgctcactcccggcggcattcgtgaa
acgcagcagttgatcatccgcacgttgcggatggattacgagatgttcgccaactccgcc
tacctccgtcaggggcgcgccgatgagtttacccgcaaagagccggcaaagcgcaagcag
gtgctggcggacattctcggtttgagcatctacgaggaactggaaggtcgggcgaaagag
cgtgcgcgcagcactgaaggacagattcgcggtctcgaaggacagatcggtgaactgcgc
cggcaggcggaacgctatgacctgctggtggaagaggtgcacactgctgaagagcgtgtc
gccgatgcgatgaagcgtgtcgaagcggcgcgactggcgctcgaagaggcgactgccagc
gtgcagaaactcgaacaggtccgtaccatccgtgacaatctccacacccagactcagcga
cgccgcagggaacgcgaggatcaggcgcaatggctggatcggcagatggaaacccaaaag
cgcgccgagtcctggattgcgcgtcgcgccgagatcgaggagggcattcgcctgctacgc
gccgccaaagcggagtgtgatcgcctcgccgccctgcgcgacgagtatgaccatctgcag
agccgtcgcgcggcgcttgcgcaggcgctcgccaatgcagaacacgccatccgctccgat
ctgcgcgttgccgaaacgcaggttcagaccctccgcgaacgcgccgcccgtcgcccgaaa
ctggcagcggaacttcagcgcctcgctgcccaacttgcagaacatcccccgattgcagaa
gcgctctccgctgcccgcacccgtcgcgccacgctgaccgaacgtctgcggcgcgtcaac
gaactgttgcggcgccgcaccgaactggagagcgacatcaaactgaaacacgactcgctg
gtcgccacgcgcgaagagcagaagcgcacactccgcacgctggcggagcaactgaagcac
gaagcgcgctggcgcaccgaactcgccgaagcgactgcggaacgggcacgcctcgaacag
gaagccgcccacctcgatactctgcgcgacgacgagcgcgcccttgccgaaaagatcggc
gccatccgcgccgaatgcgaaacggtcaaaaagcagggcgatcagatcaacgagaaactg
cgcctgctcggtcccgatctcaaagtttgcccgctctgcaagagcgaactgggacacgat
ggcattgcgcacatccaggcggagtacgaacgcgaacgtcaggcgctgcgccagcagtat
gcggctgcaaaacgcgaagccgatcacctggaagcgcacctcaaacgtctgcgcaacgac
attcgcaccatcgaggcgcgtgtcaacaccctccccgacgtgcagggacgcattgcgcgc
cttgaaagcgaactggcaaaatgtgacgtctgccgccagcagcagatcgaggcgcaacgc
ctgcacgacgatgtggcgctgcgcctgttgaagaacgattacgaaccggcggcgcgcgag
gaactgaagcgcatcgacgccgagatcaacgcactgggatcggtcgatgcgctcgaacgc
gagattgccgcagtcgaacgccaggttgccgcgctcgaagaccgcagtcgagaacaggca
agcgtgcaggcgaagattgacgggttgcagcgcgagattcagcagatcgacagcgaagac
cctgcgctgcacgaacaggagcagatcgtcgcggcgttgagcgcccaactcgcacagggc
gatttcgcgcacaccgagcgcgccgcgcttgcggacatcgaccggcagattgcagcgctg
ggatacagccgcgagcggtatgaccaggcgcaggctgatgtccaggctctggttcactgg
gaagaagacctcatacgcctgcaacgcgccgaagagtggcttgccgaaaaccgcgacgaa
ctcgcgcgcgcggctgagcgcctccggcaactcgacgcccagatcgccgccgacgaggaa
gaggtgcgttccctcgacgaacgcctgtgcgacctggcgccagccgcgcgcgcacgcgcc
gaggctgccgcccggctcgacgaactcaaccatgaggtgatggcgcgccagaaagacctg
ggcgaacgccaggcggatctgcgccgcgcacaggaagcgaccagcgcactcgccgaagcc
gaagcgcaccgccaggcgctgctcgaacgcaaggggttgttcgatgaactgacgcaggcg
ttcggcaagaaaggcatccaggcgatgctgatcgaaaccgcgcttcctgaactggaacgc
gaagccaaccgcctgctcagccgtatgaccgacaatcaactccacctgacctttgaaaca
caacgcgacacgaagaaaggggaggtcgccgagacgctcgacatcaaaatcgcggatgcg
ctcggcacccgcgtgtacgacgcctacagcggcggcgaggcgtttcgcctcgacttcgcc
atccggatcgcgctctcgaagttgctggcacggcgcgctggcgcgcgcctggaaaccctg
atcatcgacgaggggttcggatcgcaggacgctcgcgggcgtgagcgcctggtcgaggcg
atcatctcggtgcagcacgatttccgccgcgttctggtgatcacccacatccaggaattg
aaggatatgtttccggtgcagatcgaaatcgtcaaaacaccaaacggcagcgtctggaac
atcgtgtga
DBGET
integrated database retrieval system
