Roseiflexus sp. RS-1: RoseRS_0949
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Entry
RoseRS_0949 CDS
T00542
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
rrs
Roseiflexus sp. RS-1
Pathway
rrs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rrs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RoseRS_0949
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rrs03019
]
RoseRS_0949
03016 Transfer RNA biogenesis [BR:
rrs03016
]
RoseRS_0949
Enzymes [BR:
rrs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
RoseRS_0949
Messenger RNA biogenesis [BR:
rrs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
RoseRS_0949
Transfer RNA biogenesis [BR:
rrs03016
]
Prokaryotic type
tRNA degradation factors
RoseRS_0949
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH-I_KHDC4-BBP
KH_KhpA-B
KH_2
OB_PDCD11
S1_RRP5
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
ABQ89358
UniProt:
A5URV5
LinkDB
All DBs
Position
1170885..1173128
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AA seq
747 aa
AA seq
DB search
MSERQIHSVSMELAGRTLTLEAGRFAEQANGAVVVRYGDTMLLATAVASKEPRADADFFP
LTVDYEEKMYAAGKIPGSFFKREGKPTDSAILTARLTDRPLRPLFPEGYRNEVQIIVTTF
SIDMVNDPAPLAIIGASAALAISDIPFLGPVGAVQVGYIDGKVQINPEMPDMPNSDLDLV
VAGTKDAVLMVEAGAKELPEDLMLEAIIQGHQVCKQICDLQNELVRLAGRPKREFVPPPV
DTSLEEAIQQWLGNRLYEAITDPNKMVRDAQTEALKQEVIAHFTADEPEEELEARIAAVS
TAFENLLYEEVRRMILERGERVDGRGPKDIRPISIEVGLIPRVHGSGLFTRGQTQVLTLA
TLGSPAEEQRLDDLGIETTKRYIHHYNFPPFSTGEVRRLGSPRRRDIGHGALAERSLLAV
LPSKEEFPYTMRLVSETLSSNGSSSMASVCGSSLALMDAGVPIKAPVAGVAMGLITGKDG
RWRVLTDIQGIEDHLGDMDFKVAGTAKGVTGLQLDIKTTGITYEIMREAFAQAREGRLYI
LDKMNAVISEPRKELSPYAPRIITLQINPEKIGALIGPGGKTVRGITEATGAQIDIEEDG
RVYISTPDAAAAQQAVAMVEALTREIKVGDIFLGKVVRIMPFGAFVNLAPGKDGMVHVSE
LDVGRVENVEDVIKMGDEINVMVIGIEPGTGKVSLSRRALLTGETAEDRRAAGAGRGLRD
GGGRSGGSDRGGDRGPRGDDRQRPRRR
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaacgtcagattcattcagtcagtatggaactcgcagggcgcacgctcaccctg
gaggcggggcgcttcgctgagcaggcgaatggcgctgttgtcgtgcgctatggcgatacg
atgttgctggcgacggcggtcgcctcgaaggagccgcgcgccgacgccgatttctttccg
ttgaccgtcgattacgaagagaagatgtatgctgccggcaaaattcccggcagtttcttc
aagcgcgaagggaagccgaccgatagtgcgatcctgaccgcgcggctcaccgatcgtccg
ctgcgcccgctcttcccggaaggctaccgcaatgaggtgcagatcatcgtcacgaccttt
tcgattgatatggtgaacgatccggcgccgctggcgatcatcggcgcttcggcggcgctg
gcaatctccgatattccgttcctgggaccggtcggtgcggtgcaggtcgggtacatcgat
gggaaggtgcagatcaaccctgagatgcctgatatgccgaacagcgatctcgatctggtg
gttgccgggacgaaggatgcggtgctgatggtcgaagcgggggcgaaggaactcccggaa
gacctgatgctcgaagcgatcattcaggggcatcaggtatgcaagcagatctgcgatttg
cagaatgaactggtgcgcctggccggtcgcccgaagcgcgagttcgttccgccgccggtc
gatacgtcactggaagaagcgatccagcagtggttggggaaccggctgtacgaggcgatc
accgacccgaacaagatggtgcgcgacgcgcaaactgaggcgctgaagcaggaggtgatc
gcgcatttcaccgccgatgagccggaggaggaactcgaagcgcgcatcgctgccgtttcg
acagcgttcgagaatctgctgtacgaagaggtgcggcgcatgatcctcgaacgtggcgag
cgcgtcgatggacgtggtccaaaggacatccgcccgatttcgattgaggtcgggctgatc
ccgcgtgtacacgggtcggggctgttcacccgcggtcagacgcaggtgctgacgctggcg
acgctcggttcgccagctgaggagcagcgcctcgatgatctggggatcgagacgaccaaa
cgctacatccatcactacaacttcccgccgttcagcaccggcgaggtgcgacgcctgggg
tcgccgcgccgccgcgatattggtcacggtgcactggcggagcgttcgttgcttgcggtg
ctgccgtcgaaggaggagtttccctacacgatgcgtctggtttcggaaactctctcgtcg
aacggctcctcgtcgatggcgtcggtctgcggatcgtcgctggcgctgatggatgcaggc
gtgccgatcaaggcgccggtggccggtgtggcgatgggtttgattaccggcaaggatggg
cgctggcgcgtgctcaccgatattcaggggatcgaggatcatctgggcgatatggatttc
aaggtcgccggaacggcaaagggtgtcaccggtttgcagctggacatcaaaaccaccggc
attacctacgagattatgcgcgaggcgttcgctcaggcgcgcgagggtcgcctgtacatc
ctcgacaagatgaatgcggtgatcagcgagccgcgcaaagaactgtcgccatacgcgcca
cgtatcattacgttgcagatcaacccggagaagatcggtgcgctcatcgggccaggcgga
aagacggttcgaggtattaccgaagcaaccggcgcgcagatcgatatcgaggaggatgga
cgggtctatatttcgacgcccgatgccgcagccgcgcagcaggcggttgcgatggtcgag
gcgctgacccgcgagatcaaggtcggtgatattttccttggcaaagtggtgcgaatcatg
ccgtttggtgcatttgtgaaccttgcgccggggaaggatggcatggtgcacgtctccgaa
ctcgatgtcgggcgggttgagaatgtcgaggacgttatcaagatgggggatgagatcaac
gtcatggtgatcggcatcgaacccggcaccggcaaggtcagtctctcacggcgggcgctg
ctgaccggcgaaacggcggaggatcggcgcgcggctggcgcggggcgcggtctgcgcgat
ggtggcggacggagcggcggcagcgaccggggcggcgaccggggtccgcgcggcgatgac
cgccagcgcccgcgacgacggtag
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