Roseiflexus sp. RS-1: RoseRS_1264
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Entry
RoseRS_1264 CDS
T00542
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rrs
Roseiflexus sp. RS-1
Pathway
rrs03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rrs00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RoseRS_1264
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rrs03021
]
RoseRS_1264
03400 DNA repair and recombination proteins [BR:
rrs03400
]
RoseRS_1264
Enzymes [BR:
rrs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RoseRS_1264
Transcription machinery [BR:
rrs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RoseRS_1264
DNA repair and recombination proteins [BR:
rrs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RoseRS_1264
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF2016
RPOC_hybrid
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
ABQ89669
UniProt:
A5USR6
LinkDB
All DBs
Position
complement(1551587..1556101)
Genome browser
AA seq
1504 aa
AA seq
DB search
MLEINDFSAIRISLASPEDILSWSHGEVTKPETINYRTLKPERDGLFCERIFGPTKDWEC
YCGKYKRVRYKGVVCDKCGVEVTRSKVRRERMGHISLASPVSHIWFVKGTPSRLGLLLDI
SPRNLERVLYFASYMIVHVDEELKAQAREALQAEYREKRERIQQEAESKQIELSTQLTQD
LGGMESAQITTQRRIEEEYRRLRDEISAEAERLRSDLEEKQGEAAEEDILFRGTVLIEEG
EIITEKTLDALDELLDQELETLEQRKQRDLEDAEQLTGAERERKEYEASQERERLQERLQ
SELDRLVREEKERLEQIDSIKLKRILSEQEYRALREIAPGVFRADMGAGAVRDMIVRTID
LDKLAEELQNEVYTTQGQRRKKATKRLRVVEAFRKSGNRPEWMILTVLPVIPPDLRPMVQ
LDGGRFATSDLNDLYRRVINRNNRLKRLMELNAPEIIVRNEKRMLQEAVDALIDNGRRGR
AVSGKGKHRLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPDLKLHQCGLPKKMAL
ELFKPFVMRRLVEKGFAHNIKSAKRIVERVRPEVWDVLEEVIKDYLVLLNRAPSLHRLSI
QAFEAKLIEGSAIQLHPLVCAAFNADFDGDQMAVHVPLSRKAQEEARMRMLSKYNLLSPA
TGDPIITPSQDIVLGCYYLTMVKDGAKGSGKMFASIDEALLAYDKGLIDIQAPIFVRMTG
TVYGESDRPVRMLSPDENGAPRMLLETTIGRIIFNNELLEPLRFRNRLIAKKGLREIIAD
CYKYYTNLNNLTEADLDTIRAMYGDRPRDDLARYFGSEMTASQADRIKTLGFRYATRGGM
TIGVDDIEIPPKKQDILAEAEKRVTEVERQFRRGLITEEERYREIVEIWQNATKQTTEAV
KQHLNPFGPVAMMVNSAARGNINQLSQMAGMRGLMSDPTGRIIELPIKSNFREGLSVLEY
FVSTHGGRKGLADTALRTADAGYLTRRLIDVAQDNIVTIDDCGTDEGLWIYRADDREVLQ
DFEQRILGRLLAAPLVDPRTGEILANRNDEIDEALVRKCKELAIDAVYVRSPLACKADYG
ICRMCYGRNLATGKLVDIGEAVGIIAAQSIGEPGTQLTLRTFHTGGVASADDITQGLPRV
QEIFEARTPKGKAILAEIDGIVELVREDEVRKIRVVATELYTDDHELPPHYEPVVADGAQ
VNEGDVLAQSNRADLNGEPIVARIAGVVRIGAGQISVINEEREVREVVAPHTARLAPGIE
NGARVVAGQHLTEGSADPQELLALQGREAVQRYLVNEAQKVYRSQGVDINDKHIEVIVRQ
MLRRVRIEEPGDTDYLPGELIDSTEFVRKNAEIISQGGEPATASTMLLGITKASLTTDSF
LAAASFQETTRVLTEAAITGKVDYLRGLKENVVIGKLIPAGTGIEKRRQLAEEIIGELAN
VAPATSTAVVEQERPDREADEALRRRLRALIGGDGDDGERNNGDFDDQVGEDVVIPPDDD
DQEA
NT seq
4515 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaaatcaacgattttagcgccattcgcatcagtctcgcgtcgcctgaagatatt
ctgagctggtcgcacggcgaggtgaccaagccggagacgatcaactaccgcacactgaaa
cccgaacgcgacggtctgttctgtgagcgcatcttcggtccgaccaaggactgggaatgc
tactgcggcaagtataagcgtgtgcgctataagggcgtcgtctgcgacaagtgcggcgtt
gaggtgacccgctcgaaggtgcgacgtgagcgcatggggcatatttcgctggcgtcgccg
gtatcgcatatctggtttgtgaagggcacgccgagccgcctcggtctgctgctcgacatt
tcgccgcgcaacctggagcgtgtgctgtacttcgcctcatacatgatcgtgcacgttgat
gaggagttgaaggcgcaggcgcgtgaggcgttgcaggcggaataccgcgaaaagcgcgag
cgtatccagcaggaagccgagagcaagcagatcgaactctcgacccaactaacgcaggac
ctcggcggcatggagagcgcccagatcacgacgcagcggcggatcgaggaggaatatcgc
cgcctgcgcgatgagatcagcgccgaagcggaacgcctgcgcagcgatctcgaagagaag
cagggggaggcggcggaggaggatattctcttccgcggaacggtgctgatcgaagagggt
gagattatcaccgaaaagaccctcgatgcgcttgatgaattgctcgatcaggaactggag
acgcttgagcagcgcaagcagcgcgatcttgaggacgccgagcagttgaccggcgccgag
cgcgagcgcaaggagtatgaagccagccaggaacgggagcgcttgcaggagcgcttgcag
agcgaacttgatcgcctggtgcgcgaggaaaaggagcgcctcgaacagatcgattcgatc
aaactgaagcgcattctgagtgaacaggagtatcgcgcgctccgtgagattgcgccgggc
gtgtttcgcgccgatatgggtgcaggggcggtgcgcgacatgatcgtgcgcacgatcgac
ctcgataaactggcggaagaattgcagaacgaggtgtataccacgcaggggcagcggcgc
aagaaggcgaccaaacgcctgcgcgtggtcgaggcgttccgcaagagcggcaatcgccct
gagtggatgatcctgacggtgctgccggtcattccgcccgacctgcgcccgatggtgcaa
ctcgatggcggtcgtttcgccaccagtgacctcaacgacctgtaccggcgcgtcatcaat
cgcaataatcgcctgaagcgcctgatggaactcaacgcgcccgagatcatcgtgcgcaac
gagaagcgcatgctccaggaagcggtcgatgcgctgatcgataatgggcgccgcgggcgc
gccgtgtcgggcaagggaaagcaccgcctgaagagcctgagcgatatgctcaaaggcaag
caggggcgcttccgccagaacctgctcggtaagcgcgtcgactactcaggacgctcggtg
atcgtggttggaccagacctgaaactgcaccagtgcggtctgcctaagaaaatggcgctc
gaactgttcaagccgttcgtgatgcgccgcctggtggaaaaagggttcgcccataacatc
aaaagcgccaaacgcatcgtcgagcgcgttcgccctgaagtgtgggacgtgctcgaagag
gtgatcaaggactacctggtgctgctgaaccgcgctccgtcgctgcaccgcctctcgatc
caggcattcgaagccaaactgatcgagggttcggcgatccagttgcatccgctcgtctgc
gcggcattcaatgccgacttcgatggcgaccagatggcggtgcacgtgccgctctcgcgt
aaggcgcaggaagaagcgcgcatgcgcatgctgtcgaagtacaacctgttgtcgccagcc
accggtgatccgatcattacaccgtcacaggatatcgtgcttgggtgttactacctgacg
atggtgaaagacggggcaaagggcagcggtaagatgttcgcctcgatcgatgaggcgttg
ctggcatacgacaaaggactgatcgatatccaggcgccgatctttgttcgcatgacgggg
acggtgtatggtgagagcgatcgaccggtgcggatgctcagccccgacgaaaacggcgcg
ccccggatgttgctggagacgacgattggacgaatcattttcaacaatgaactgctcgaa
ccattgcgcttccgcaatcgcctgatcgccaaaaaagggttgcgtgagatcatcgccgac
tgctacaaatactatacgaatctcaacaacctgaccgaagccgatctcgacacgattcgc
gcgatgtacggcgaccgtccgcgcgatgacctggcgcggtattttggttcggaaatgacg
gccagccaggccgaccggatcaagacgctgggattcagatatgcaacgcgcggcggtatg
acgattggcgtcgatgatatcgaaattccgccaaagaagcaggacattcttgccgaagcc
gaaaagcgcgtcactgaggtggaacgacagttccggcgcggtctgatcaccgaagaggag
cgctaccgcgaaattgtggaaatctggcagaatgccaccaaacaaaccaccgaagcggtc
aagcagcatctgaatccgttcggtccggtggcgatgatggtcaattccgcagcccgcggg
aatatcaaccagttgagccagatggccggtatgcgtggtttgatgtccgacccgaccggt
cggatcatcgaactgccgatcaagagcaacttccgggaaggtctctcggtgctcgaatac
tttgtgtcaacccacggcggacgcaaaggtctggcggataccgcgctgcgcacggcggac
gccgggtatctgacccgccgtctgatcgatgtggcgcaggacaatatcgtgaccatcgat
gactgtgggactgatgagggattgtggatctaccgcgccgatgaccgcgaagtcctgcag
gacttcgagcagcgcatcctgggtcgtctgctggcagcgcccctggtcgatccacgaacg
ggtgagattcttgccaatcgtaatgatgagatcgatgaagcgctggtgcgcaagtgcaag
gaacttgccatcgatgcggtgtatgtccgctcgccgctggcatgcaaagccgactacggc
atctgccgcatgtgctatgggcgcaacctggcaaccggcaaactggtcgatatcggcgag
gcggtcggcattattgctgcacaatcgattggtgagccgggcacgcagttgacgctgcgc
accttccataccggcggtgtggcgtcggcagacgacattacccagggtttgccgcgtgtt
caggagattttcgaggcgcgcacgccgaagggcaaggcgatcctggcggagatcgacggc
atcgtcgaactggtgcgcgaagacgaggtgcggaagatccgcgtcgtcgcaaccgaactc
tacaccgacgatcacgaactgccgccgcactatgagccggtcgtggcggacggggcgcag
gtgaacgagggtgatgtgctggcgcagagcaatcgggcggatctcaatggcgaaccgatt
gttgcacggatcgccggtgttgtgcgcataggcgccggacagatcagcgtgatcaacgaa
gagcgtgaggtgcgcgaagtggtggcgccgcacacggcgcgcctggcgccgggcatcgag
aacggagcgcgcgtcgttgccgggcagcacctgaccgagggttccgccgatccgcaggaa
cttcttgcactccaggggcgcgaagcggtgcagcgctacctggtcaacgaggcgcaaaaa
gtgtatcgctcgcagggtgtcgatattaacgataagcatatcgaagtcatcgtgcgccag
atgctgcgccgcgtgcggatcgaagagccgggcgacaccgattacctgccgggtgaactg
atcgactcgacggaattcgtgcggaagaatgccgaaatcatcagtcagggcggtgagccg
gcgacggcgtcaacgatgctgctgggcatcaccaaggcgtcgctgacgaccgatagtttc
ctggcggcggcatcgttccaggagacgacccgcgtgctgaccgaagcagcgatcaccggc
aaggtcgattacctgcggggtctgaaggagaatgtcgtcatcggcaaactcattccggct
ggcacagggatcgagaagcgacgccagcttgctgaggagatcatcggcgaactggcgaat
gttgcacctgcgaccagtacggcggtcgtcgagcaggaacgtcccgaccgcgaagccgat
gaggcgttgcggcgtcggttgcgggcgctgatcggcggcgatggcgatgatggtgagagg
aacaatggcgacttcgatgatcaggtcggtgaggatgtggtgatcccgcctgatgatgac
gatcaggaagcgtga
DBGET
integrated database retrieval system
