Roseiflexus sp. RS-1: RoseRS_1899
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Entry
RoseRS_1899 CDS
T00542
Name
(GenBank) DNA polymerase III, epsilon subunit
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
rrs
Roseiflexus sp. RS-1
Pathway
rrs03030
DNA replication
rrs03430
Mismatch repair
rrs03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rrs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RoseRS_1899
03430 Mismatch repair
RoseRS_1899
03440 Homologous recombination
RoseRS_1899
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rrs03032
]
RoseRS_1899
03400 DNA repair and recombination proteins [BR:
rrs03400
]
RoseRS_1899
Enzymes [BR:
rrs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RoseRS_1899
DNA replication proteins [BR:
rrs03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RoseRS_1899
DNA repair and recombination proteins [BR:
rrs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RoseRS_1899
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
RNase_T
DEAD
DEAD_2
ResIII
DNA_pol_A_exo1
Rv2179c-like
DEDDh_C
Helicase_C
Motif
Other DBs
NCBI-ProteinID:
ABQ90288
LinkDB
All DBs
Position
2356599..2359469
Genome browser
AA seq
956 aa
AA seq
DB search
MNQIYIAIDVETTGLEAGVDEIIEIAAVKFNADEVLETFSTLVQPVHSLPLNSSRLTGIT
ADMLASAPRFAEVAPRFAAFLKNYPLVGHNVEFDLRMLRAQGMRLPQPAFDTFELATLLM
PRTPAYRLSALAATLGIHHDEAHRALSDADVTRQIFLYLLRRIEALPLDDLNEIMRLTSQ
IEWGLRSLFEEAQRAKARRVFVDAIPIQADRYDDRDEKIVPLKPTGDERPIDLADIRRFF
SPDGALGRAFAGYEQRDQQVRMSEAVADTFNQGGALIAEAGTGTGKGLAYLVPAALHAAR
RGERVVISTNTINLQDQLFFKDIPALQQVMSNGADEAPFTAALLKGRSNYLCLKRYKDLR
RDQRLMSDDVRALLKVQLWLPTTESGDRAELPLHEGENASWNRMSAAWEQCTGPRCSEFQ
RCFFFKARKQAEAAHLVIVNHALLMADLAVENDVIPPYDYLIIDEAHNLEDVATDQLSFN
VDREGLLAFLDDIFTEGQAQVVGGLLSELPNHFRESMATRTDIDRADAIADTLRPAVARA
RDAVYGCFNVLMTFIKREAELTAYDSRLRITDSLRRKPSWAEVERAWDALSVALHAVGEG
LGRLETLLIDLKDAELLEYDALMLRVQALRRYATDVRVNIGHILTGGAEEKVTWLTHDRM
RDTLTLSAAPLSVADVLRTNLFEAKTATILTSATLSVGGNFAFIRERIGLDHAEELTLDS
PFDYTRQALLYIPQDIPEPNQNGYQRALEQAIIDLARATGGRMLVLFTATNALRQTYRAI
QEPLEDAGIAVLGQGIDGSRRSLLERFKEFPGTVLLGTSSFWEGVDVVGDALSVLVIAKL
PFSVPTDPIFAARSEQFDDPFNQYAVPQSILRFKQGFGRLIRSREDRGVVAVLDRRLLTK
KYGQMFLESLPHTTVRSGPLQRLPDLAKRFLAVGNGAINGAPGATATASEMKRTQR
NT seq
2871 nt
NT seq
+upstream
nt +downstream
nt
atgaaccagatctacatcgcaatcgatgtcgaaacgaccgggcttgaggcgggggttgat
gagattatcgagatcgctgcggtcaagttcaacgcagatgaggtgctcgaaacgttcagc
accctggtgcaaccggtccattcactcccccttaattccagccggttgacaggcatcact
gcagatatgctcgccagcgccccgcgctttgccgaagttgcgccacgttttgccgcgttc
ctcaagaattacccgctcgtcgggcacaatgtcgagttcgacctgcgtatgctgcgcgct
caggggatgcgactgccccaaccagcattcgatacgtttgaactggcaacgttgctgatg
ccgcgcacgccagcgtaccgccttagcgcgctcgcggcaaccctgggtattcatcacgat
gaagctcaccgcgcgctgagcgacgcagatgtaacccgtcagatcttcctctacctgctg
cgccggattgaggcgctccccctggacgatctcaatgagatcatgcgcctgaccagccag
attgagtggggtctgcggagcctgttcgaggaagcgcaacgcgcaaaagcgcgacgcgtc
tttgtggacgcaatacccatccaggcagaccgttacgacgatcgtgatgagaagatcgtg
ccgctgaaaccgaccggtgatgagcgcccgatcgatctggcggacatccgtcggttcttc
agtcctgatggcgcgctcggtcgcgcgtttgcggggtatgaacagcgcgatcagcaggtg
cgtatgtccgaagcggtcgccgatacgttcaaccagggaggggcgctgatcgccgaagcc
ggcaccggcaccggcaaagggctggcgtacctggttcctgcggcgctgcacgctgcgcgc
cgtggcgaacgggtggtgatttcgaccaatacgatcaatctgcaagatcaactcttcttc
aaagacatcccggcgttgcaacaggtgatgtccaacggcgccgacgaagcgccgttcact
gcggcgctgctcaaagggcgcagcaactatctctgtctcaagcgctataaagacctgcgc
cgcgatcagcggttgatgtcggacgatgtgcgcgcgctgctcaaggtgcagttgtggctg
ccgacgaccgaaagcggggatcgggcggaactgccgcttcacgagggcgagaatgcgtcc
tggaacaggatgagcgccgcctgggaacagtgcaccggtccacggtgcagcgagtttcag
cgctgcttcttcttcaaggcgcgcaaacaggcggaagcggcgcacctggtgatcgtcaac
cacgcgctgctcatggcggatctggcggtcgaaaacgatgtcatcccaccctacgactac
ctcatcatcgatgaggcgcacaatctggaagacgtggctaccgaccagttgagtttcaat
gttgatcgtgaaggattgcttgcatttctcgacgatattttcaccgaagggcaggcgcag
gtggtcggcggtctgctgagcgaactgcccaaccacttccgcgaaagtatggcaacccgc
accgacatcgaccgcgccgatgcgattgccgatacgttgcgcccggcagtggcgcgcgcg
cgcgatgcggtgtatgggtgcttcaatgtgctgatgacattcatcaagcgcgaagccgaa
ctgaccgcctatgactcgcggttgcgcatcaccgattcgctgcgacgcaaaccgtcgtgg
gcagaggtcgaacgcgcctgggacgcgctcagcgtggcgctccacgctgtcggcgagggg
ctggggcgtctggagacgttgttgatcgaccttaaggatgcagaattactggagtacgac
gccctgatgctacgggtgcaggcgctcaggcgctacgccaccgacgtgcgcgtcaatatc
gggcatatcctgaccggcggcgcggaagaaaaggtcacctggctgactcacgatcgtatg
cgcgatacgctgactctttccgcagcgccgttgtcggtcgctgacgtgctgcgcaccaac
ctgttcgaagcgaagactgcgaccatcctgacctcggcgacgctgtcggtcggcggcaac
tttgccttcatccgtgaacgcattggtcttgatcacgccgaagagttgacgctggactcg
ccgttcgactatacccggcaggcgttgctctacatcccgcaggatattcccgaaccaaac
cagaatggctaccagcgggcgctggagcaggcgatcatcgacctggcgcgcgcgaccggc
ggtcgaatgctggtgctgtttaccgctacaaatgcgctacgccagacgtaccgcgccatc
caggagccgctggaagatgcagggatcgcggtgctcggtcaggggatcgacggttcgcgc
cgcagtctgctcgaacgtttcaaggagtttcccggtaccgtgctgctcggcacgtcgagt
ttctgggaaggggttgatgtcgtcggcgatgcgctctcggtgctggtgatcgccaaactc
cctttcagcgtgcccaccgacccgatctttgcagcgcggtcggaacagttcgacgatccc
ttcaaccagtatgcagtgccacagtcgatcctgcgcttcaagcaggggttcgggcgcctg
atccgttccagagaggatcgcggcgtggtggcagtcctcgaccgtcgcctgctgacgaag
aagtatggacagatgttccttgagtcgctgccgcataccaccgtgcgcagcggaccgttg
caacgcctgcccgatcttgcgaaacgcttcctggcggtcggcaacggtgcgatcaacggc
gctcccggcgcaacggcaaccgcttctgaaatgaaacgcacgcagcgataa
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