Roseiflexus sp. RS-1: RoseRS_2008
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Entry
RoseRS_2008 CDS
T00542
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
rrs
Roseiflexus sp. RS-1
Pathway
rrs03410
Base excision repair
rrs03430
Mismatch repair
rrs03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rrs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RoseRS_2008
03430 Mismatch repair
RoseRS_2008
03440 Homologous recombination
RoseRS_2008
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rrs03400
]
RoseRS_2008
DNA repair and recombination proteins [BR:
rrs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
RoseRS_2008
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
RoseRS_2008
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RoseRS_2008
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
ABQ90394
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Position
complement(2489678..2491396)
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AA seq
572 aa
AA seq
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MSTSRLSARNKRWHILETPPEFIAACRALPPLIAALLYQRGVRSDAAMREFFSADYRLND
PFSMRGMETAVQRIAAAIHDHELMAVYGDYDTDGVTAVTLLVQAISAMGGLILPYVPHRI
REGYGLNIEAIDALAREGVRLLITVDCGISNVREAAHARAVGIDLIITDHHHPPARLPDA
VAIINPRQPGCSYPFKHLVGVGIAFQLVRALARRGFRSTLQKDDLLDVVALGTVTDMGPL
IGENRVLVTHGLKALNAAQRPGVRALIQAAGMTPGRVTSTDISFGLGPRLNASGRIDNAR
LSYELLLAEEFETAQRLAHELNLQNRQRQELSKTVHEQASAQIQALGKQNQRLIILDGTD
YPAGVVGLVAARLVEEYGRPTVLIERGEQWSRGSARSVPGFSIIDALTDCADLFERFGGH
TEAAGFTIATDRLPALEDRLLRYAAEHLSDDLLMPGITIDAEVPPASLSYELLGELAKLE
PFGHGNPQPVLMSRRLQVTGAWPRGSEGQHLKLRLVGADGSGPFDAIAFRFGHLARYFEQ
PRWIDIVYTLEADEWNGSPSLQLNVKDFRSAR
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atgtccacatctcgattgtccgcacgcaacaaacgctggcacattctcgaaacgccgccg
gagttcatcgccgcctgtcgcgcattgccgccgttgatcgcggcgttgctgtatcagcgc
ggggtgcgcagcgatgctgcgatgcgcgagttcttcagcgccgactatcgcctgaacgat
cctttcagcatgcgcgggatggagaccgcggtgcaacgtatcgccgcagccattcacgat
cacgagttgatggcggtgtacggcgattacgataccgacggcgtgaccgcagtgacgctg
ctggtgcaggcgatcagcgccatgggcgggttgattctgccctatgttccacaccgcatc
cgtgaggggtatggcttgaatatcgaggccatcgatgcgcttgcccgtgaaggggttcgc
ctgctgatcaccgtcgattgcggcatcagcaatgtacgcgaagccgcccatgcgcgcgcg
gttggcatcgatctgatcattaccgatcatcaccatccccccgctcgcctgccggatgcg
gtggcgatcatcaatccccgccagccggggtgttcctatccgttcaaacatctggtcggc
gtcgggatcgccttccagctggtgcgcgcactggcgcgacgcgggttccgttctaccctg
caaaaggacgatctcctcgatgtggtcgccctcggcacggtgaccgatatgggtccgctg
atcggcgagaatcgcgtgctggtgacgcacgggctgaaggcgctcaatgcggcgcagcga
ccaggggtgcgcgcactgatccaggctgccggcatgactcccggcagggtgacctcgacc
gacatcagtttcgggttgggaccgcggttgaatgcgtccggtcgcatcgataacgcgcga
ttgagttatgaactgttgcttgcagaagagttcgagacggcgcaacgcctggcgcacgaa
ctgaatcttcagaaccgtcagcgccaggagttgtcgaagacggttcacgaacaggccagc
gcccagattcaggcgctcggcaaacagaaccagcggctgatcatcctcgatggaaccgat
taccccgccggtgtggtcggtctggtggcagcgcgtctggtcgaggagtatgggcgcccg
acggtgctgattgaacgcggtgagcagtggtcgcgcggttcggcgcgctcggtgcccgga
ttcagcattatcgatgcgttgaccgactgcgccgatctgttcgagcgtttcggcgggcat
accgaagcagccgggtttaccatcgccaccgatcggttgccggcgcttgaagaccgcctg
ctccgctatgccgcagagcatctgagcgatgatctgttgatgccagggatcactatcgac
gccgaagttccgccagcgtcgttgtcgtatgaattgctgggggaactggcaaaactcgaa
ccgtttgggcacgggaatccgcaaccggtgttgatgagccgacgcttgcaggtcaccggt
gcctggccgcgcggcagcgagggacagcacctgaaactccggttggtcggcgccgatggc
agtggacccttcgacgcaattgcgttccgtttcgggcatctggcgcgctacttcgagcag
ccacgctggatagatattgtctacacgctcgaagccgatgagtggaacggaagcccttca
cttcagttgaatgtcaaagatttcaggagcgcgcggtaa
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