Roseiflexus sp. RS-1: RoseRS_3701
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Entry
RoseRS_3701 CDS
T00542
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rrs
Roseiflexus sp. RS-1
Pathway
rrs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rrs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RoseRS_3701
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rrs03019
]
RoseRS_3701
Enzymes [BR:
rrs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RoseRS_3701
Messenger RNA biogenesis [BR:
rrs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RoseRS_3701
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Methyltr_RsmB-F
AAA_22
P-loop_SecA
Phage_endo_I
CMS1
V1R
Motif
Other DBs
NCBI-ProteinID:
ABQ92056
LinkDB
All DBs
Position
4627465..4628868
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AA seq
467 aa
AA seq
DB search
MSFDSFRFHPQITAGIRDLGYHTPTPIQEQVIPHALDGRDVIGIAQTGTGKTAAFVLPIL
QRLMRGPRGRVRAMIVTPTRELAEQIQGVIEALGKYTGLRSVTLYGGVGYQGQIQRLRRG
VEIAVVCPGRLLDHLERGTLTLEHLDMLILDEADQMFDMGFLPDVRRILRLAPAQRQTML
FSATMPDAIRALAREALREPQTIQIGRSAPVSTVTHAIYPVAEHLKTALLIELLRHTDTG
SVLIFTRTKHRAQHLSDTLARMGYRATALQGNMSQNRRQAALDGFRSGRYQILVATDIAA
RGIDVAHISHVINYDMPQTAEAYTHRIGRTGRAARTGDAFTLVTRSDTGMVRAIERLIGE
PLKRETVPGFDYHAAAPAHDARSDHAPRHHAMPRHYEPHSQDERDNRAPRRHDAQERRSD
TAPRRRDVQEWRSDAAPNRHKPRSRDTSARSTRADRSDRTVSGRRRP
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgttcgactcatttcgctttcatccgcagattaccgccggtattcgcgacctcgga
taccatacgccgactcctatccaggaacaggttattccccacgctctggacgggcgtgat
gtcattggcatcgcgcaaaccggcaccggcaagacggcagcgttcgtactgcccatcctg
caacgcctcatgcggggaccgcgcggtcgtgtgcgtgccatgatcgtcacgccgacccgt
gaactggcggagcagattcagggggtgatcgaggcgctcggcaaatacaccgggcttcgc
agcgtcaccctgtacggcggcgtcgggtatcaggggcagatccagcggctgcgacgcggc
gtcgagattgccgtcgtttgtccggggcgtttgctcgaccatctggaacgtgggacgcta
acgctcgagcatctggatatgctgatcctcgatgaagccgatcagatgttcgatatggga
tttttgcccgatgtccgccgaattctgcgccttgcgccggcgcagcgtcagacgatgctt
ttctcggcgacaatgcccgacgcgattcgcgcactggcgcgcgaggcgttgcgtgaaccg
cagacgattcagatcgggcgcagtgcgccggtttccactgtcacccacgcgatctatccg
gttgccgagcacctgaagacggcactgttgatcgagttgctgcgccacaccgacaccgga
tcggtgctgattttcacccgtacgaagcaccgcgcgcaacatctcagcgatacactggcg
cgcatggggtaccgggcgacagcattgcagggcaatatgtcgcagaaccgtcgccaggcg
gcgcttgacgggttccgcagcggcaggtatcagatcctggtcgcaactgatattgccgcg
cgcggcatcgatgtggcgcatatttcgcacgtcatcaactacgatatgccgcaaaccgcc
gaggcgtacacccatcgcatcgggcgcaccgggcgtgcagcgcgcaccggggacgcattt
acgctggtaacccgtagcgatacaggaatggtgcgcgctatcgagcgcctgatcggcgag
ccgttgaaacgcgaaaccgtgcccggcttcgattatcacgcggcagcgccggcacacgat
gcccggtctgatcacgcaccccgtcaccacgcaatgccgcgccactatgagccacattcc
caggatgagcgggacaatcgggcgccgcgccgccacgatgcgcaagagcggcgatctgat
accgcgccgcgccgtcgcgatgtgcaagagtggcgatctgatgccgcgccgaaccgccac
aaaccccgctcccgcgatacgtctgcgcgttcaacccgcgccgatcgctctgatcgaacg
gtttcggggcggcgacgaccgtaa
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