Rhodococcus rhodochrous: 4535765_00898
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Entry
4535765_00898 CDS
T05521
Name
(GenBank) DNA repair helicase
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
rrt
Rhodococcus rhodochrous
Pathway
rrt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rrt00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
4535765_00898
09124 Replication and repair
03420 Nucleotide excision repair
4535765_00898
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rrt03021
]
4535765_00898
03400 DNA repair and recombination proteins [BR:
rrt03400
]
4535765_00898
Enzymes [BR:
rrt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
4535765_00898
Transcription machinery [BR:
rrt03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
4535765_00898
DNA repair and recombination proteins [BR:
rrt03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
4535765_00898
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
DUF7108
Motif
Other DBs
NCBI-ProteinID:
SNV13129
LinkDB
All DBs
Position
1:complement(952636..954294)
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AA seq
552 aa
AA seq
DB search
MADGPLIVQSDKTVLLEVDHERANEARQAIAPFAELERAPEHIHTYRVTPLALWNARAAG
HDAEQVVDALVSHSRFAVPQALLVDIVDTMGRYGRLQLVKNPAHGLTLVSFDRAVLAEVL
RNKKIAPMLGARIDDDTVIVHPSERGRVKQMLLKIGWPAEDLAGYVDGEAHSISLDFETN
PWHLRDYQELAADSFWSGGSGVVVLPCGAGKTMVGAAAMAKAGATTLILVTNTVAGRQWK
RELIARTSLTEDEIGEYSGEKKEIRPVTIATYQVITRKSKGEYRNLELFDSRDWGLMIYD
EVHLLPAPVFRMTADLQSRRRLGLTATLVREDGREGDVFSLIGPKRFDAPWKDIEAQGWI
APADCVEVRVTLTDAERMAYAVAEPEERYKLCSTARTKIPVVESILEQHKDAPTLIIGAY
IDQLDELGEALDAPVIKGSTKTKEREALFDRFRSGELKVLVVSKVANFSIDLPEASVAIQ
VSGTFGSRQEEAQRLGRLLRPKHDGGQAHFYSVVSRDTLDAEYAAHRQRFLAEQGYAYRI
TDADDLLGPQIG
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
gtggccgacggaccgctcatcgtccagtccgacaagaccgtgctcctcgaggtcgatcac
gaacgggcgaacgaggcgcggcaggcgatcgcacccttcgccgagctcgaacgcgccccc
gagcacatccacacctaccgggtgacgccgctggcactgtggaacgcccgtgccgccggt
cacgacgccgagcaggtcgtcgacgcactggtctcgcattcccggttcgccgtcccgcag
gcgctgctcgtcgacatcgtcgacaccatgggccgctacgggcgcctccagctggtcaag
aaccccgcacacggcctgaccctggtcagcttcgatcgggcggtgctcgccgaggtcctg
cggaacaagaagatcgcaccgatgctcggtgcccgtatcgacgacgacaccgtgatcgtg
catccgagcgagcgcggacgcgtcaagcagatgctgctgaagatcggctggccggccgag
gacctcgcagggtatgtcgacggcgaggcccattcgatctcgctggacttcgagacgaac
ccctggcacctgcgcgactaccaggaactggcggccgactcgttctggtcgggcggctcg
ggtgtcgtggtgctgccgtgcggtgccggcaagacgatggtcggtgccgccgcgatggcg
aaggccggcgcgacgacgctcatcctcgtgacgaacacggtcgccgggcgccagtggaag
cgcgagttgattgcgcgcacctccctcaccgaggacgagatcggcgagtactcgggtgag
aagaaggagatccgtccggtcaccatcgccacctaccaggtgatcacccgcaagtcgaag
ggcgaataccgcaatctcgagttgttcgactcccgcgactggggattgatgatctacgac
gaggtgcacctgctgccggcgccggtcttccggatgaccgccgatctgcagtcccgccgc
cgcctcggcctcaccgcgacgctcgtgcgtgaggacgggcgcgaaggcgacgtcttctcg
ctcatcggcccgaagaggttcgacgcgccgtggaaggacatcgaggcccagggctggatc
gcgccggccgactgtgtggaggtccgtgtgaccctcaccgacgccgagcgcatggcgtac
gcggtggccgagcccgaggagcggtacaagctgtgctcgaccgcgcgcaccaagattccg
gtggtcgagtcgatcctcgagcagcacaaggacgccccgacactgatcatcggcgcctac
atcgatcagctcgacgagctcggtgaagcgctcgacgccccggtgatcaagggttcgacg
aagacgaaggaacgcgaggcgctgttcgaccggttccggtcgggcgagttgaaggtgctc
gtcgtgtcgaaggtcgcgaacttctccatcgacctgccggaggcctcggtcgcgatccag
gtgtcgggcaccttcggttcgcgtcaggaggaggcccagcgtctcggacgtctgctgcgt
ccgaagcacgacggcgggcaggcccacttctactccgtggtctcgcgcgacacgctcgac
gccgagtacgccgcgcaccgccagcggttcctcgccgagcagggttacgcgtaccggatc
accgacgccgacgacctgctcggaccgcagatcggctga
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