Rhodococcus rhodochrous: 4535765_01024
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Entry
4535765_01024 CDS
T05521
Symbol
mutM_1
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
rrt
Rhodococcus rhodochrous
Pathway
rrt03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rrt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
4535765_01024 (mutM_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rrt03400
]
4535765_01024 (mutM_1)
Enzymes [BR:
rrt01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
4535765_01024 (mutM_1)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
4535765_01024 (mutM_1)
DNA repair and recombination proteins [BR:
rrt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
4535765_01024 (mutM_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Zn_ribbon_TFIIB
NFACT_N
Ribosomal_S13
Motif
Other DBs
NCBI-ProteinID:
SNV13947
LinkDB
All DBs
Position
1:complement(1073687..1074553)
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AA seq
288 aa
AA seq
DB search
MPELPEVEALAVFLREHAVGSVVGRIDVAALSVLQTADPPITALQGRDITGASRFGKFLA
IDCSGLHLITHLSRAGWLRWLDEPSQAPPKLGRGPLALRVHLFAPDATTPAFDLTEAGTK
KRLAVWVVDDPQTVPGIARLGPDALALTRDEFAALLTDSTSRLKTLLTDQKVLAGIGNAY
SDEILHVAQQSPFATAGKLTDDEVTALYGSMRSVLTDAVTRSVGQDAARLKGEKRSGLRV
HGRTGEPCPVCGDTVREVSYTDRSFQYCPTCQTGGKVLADRRMSRLLK
NT seq
867 nt
NT seq
+upstream
nt +downstream
nt
atgcccgagctccccgaagtggaagcacttgcggtgttcctgcgcgagcacgcggtcggc
agcgtcgtcggacgcatcgacgtcgcggcgctgagcgtgctgcagacggccgacccgccg
atcacggcgttgcagggacgcgacatcaccggagcttcgcgcttcggcaagttcctcgcg
atcgactgttcggggctgcatctgatcacgcacctgtcgcgggcaggctggttgcgctgg
ctcgacgaaccgtcgcaggctcccccgaaactcggtcgcggtccgctcgccctccgtgtg
cacctgttcgcccccgacgcgacgacaccggccttcgatctcaccgaggccggcacgaag
aaacgcctggcggtctgggtcgtcgacgatccgcagacggtgcccggcatcgcccgcctc
ggccccgacgcgctcgcgctcacccgggacgagttcgccgcgctcctgaccgacagcacc
tcgcgtctcaagacgctgctcaccgatcagaaggttctcgcgggcatcggcaacgcctac
tccgacgagatcctgcacgtcgcgcagcagtcgccgttcgcgacagccggcaagctcacc
gacgacgaggtgaccgccctgtacgggtcgatgcggtcggtactgaccgacgccgtcacc
cgctcggtcgggcaggacgcggcgcgcctcaagggcgagaaacggtcgggactgcgcgtg
cacgggcgtaccggcgagccgtgcccggtgtgcggcgacaccgtccgagaggtctcctac
accgaccgttcgttccagtactgccccacctgccagaccggagggaaggtcctcgccgac
cggcggatgtcccgcctgctgaagtag
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