Rhodococcus rhodochrous: 4535765_01129
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Entry
4535765_01129 CDS
T05521
Symbol
mfd
Name
(GenBank) transcription repair coupling factor mfd
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rrt
Rhodococcus rhodochrous
Pathway
rrt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rrt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
4535765_01129 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rrt03400
]
4535765_01129 (mfd)
Enzymes [BR:
rrt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
4535765_01129 (mfd)
DNA repair and recombination proteins [BR:
rrt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
4535765_01129 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
LSDAT_prok
UB2H
AAA_22
RecG_dom3_C
DUF3638
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
SNV14489
LinkDB
All DBs
Position
1:1183073..1186726
Genome browser
AA seq
1217 aa
AA seq
DB search
MSAVPPAAVPLSGLARIALADDRLRRIGELAGSAEQEIVAPPAARPFVAAALAEKTPLLV
VTATGREADDLTAELTEMLGEGVTQFPSWETLPHERLSPSADTVGRRLHVLRRLARPDDR
DLGPELRVVVATVRSLVQPMAPGLGEIDPVTLRVGTEHDFEELVERLVELAYTRVDMVGK
RGEFAVRGGILDVFPPTADHPVRVEFWGDEVTELRCFSVADQRSISEVDVPVLVAPPCRE
LLLTDEVKARAAQLAEDNPADAALVEMLDKMAGGIPVEGMEALLPVLQPGELQLLTDVLP
AGAHVLICDPEKVRTRASDLARTGQEFLEASWTAASIGGAAPLDTSNLNGVDGRKLDLGA
SAYRSLRQVREAAQAAGRPWWTLSPLASGADTELVLDVQPAPEVRGSEDLLSMLFVNLRA
HVTAGGRAVIVVAGAGTGQRILERLKENEVPAAKLEPGTEPVRGQVGVMRGCLHEGVVLP
GNDDNVVPGLVIVTEADLTGNRVVTEGRKTPVKRRNQVDPLALNAGDFVVHDQHGIGKFV
EMVERTVGGARREYLVIEYAPGKRGQPGDKLFVPMEQLDQLSRYVGGELPSVSKLGGSDW
ANTKRKARKAVREIAGELVRLYAARQASPGHAFAPDSPWQKEMEDAFPFTETQDQLTVIS
EVKTDMEKPVPMDRVVIGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHLQTFT
ERMAAFPVTVKGLSRFTDASESRAVTEGMADGTVDIVVGTHRLLQTGIRWKDLGLVIVDE
EQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEERHPILTYV
GAYNDKQVAAAIRRELLRDGQVFYVHNRVSSIDKAAKRLRDLVPEARIAVAHGQMNEETL
EKTVQGFWQREFDVLVCTTIVETGLDISNANTLIVERADSLGLSQLHQLRGRVGRSRERG
YAYFLYPAEKPLTETAYDRLATISQNSDLGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGV
GFDLYVRLVGEAVEAYRAAADGRTVTTDEAPKEVRIDLPVDAHIPADYVASDRLRLEAYR
KLAAANDDAAIATVVDELVDRYGPLPEEVQRLVSVGRLRLLCREYGLEEVAVTGTQIRIS
PMELPDSKQMRLERLYPGAQYRATSGLVQLPIPRTGGVGSDRVRDVALLQYIADFLLALD
GKPQGSVDLNSAATVNA
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
ttgtctgctgtgcccccggccgctgtcccactgtccggattggcgcggatcgcgctggcc
gacgaccgactgcgcaggatcggcgagctcgccggttccgccgaacaggagatcgtcgcc
ccacccgccgcgcggccgttcgtcgccgcggcgctggccgagaagacgcctctgctcgtg
gtcaccgccaccggacgcgaggccgacgatctcaccgccgaactcaccgagatgctcggc
gagggcgtcacgcagttcccctcgtgggagaccctgccgcacgagcgcctgtcgccgagc
gccgacacggtcggccgccgtctgcacgtcctgcgccggctcgcccgtcccgacgatcgt
gatctcggccccgaactgagggtcgtcgtcgccaccgtgcggtcgctggtgcagccgatg
gcgcccggactcggcgagatcgaccccgtcacgctgcgggtcggcaccgaacacgacttc
gaggaactcgtcgagcgcctcgtcgaactggcgtacacccgcgtcgacatggtcggcaag
cgcggtgagttcgcggtgcgcggcggcatcctcgacgtcttcccgcccaccgccgaccat
ccggtccgcgtcgagttctggggcgacgaggtcaccgaacttcgctgcttctccgtcgcc
gaccagcgttcgatctccgaggtcgacgtgccggtgctcgtcgcgccgccgtgccgcgaa
ctgctgctcaccgacgaggtcaaggcccgcgccgcgcagctcgccgaggacaacccggcc
gatgcggcgctcgtcgagatgctcgacaagatggccggcggcatccccgtcgagggcatg
gaagcgttgctgccggtgctgcagcccggcgagttgcagttgctcaccgacgttctgccc
gccggggcgcacgtgctgatctgcgacccggagaaggtccgtacccgtgcgagcgatctc
gcccgcaccgggcaggagttcctcgaggcgtcgtggacggccgcctcgatcggtggtgcg
gcgccgctcgacacctcgaacctcaacggggtggacggccggaagctcgatctcggcgcg
tcggcctaccggtcgctgcgtcaggtgcgcgaggccgcgcaggccgcgggcagaccgtgg
tggacgctcagcccgctcgcctccggtgccgacaccgaactcgtcctcgacgtgcagccg
gcccccgaggtccgcggctccgaggacctgctgtcgatgctgttcgtgaacctgcgtgcc
cacgtcaccgccggtggccgtgcggtgatcgtcgtcgccggtgcgggcaccggacagcgc
atcctcgagcggctgaaggagaacgaggtccccgccgcgaagctcgaaccgggcaccgaa
ccggtgcgcgggcaggtcggcgtcatgcgcggctgcctgcacgagggcgtcgtcctcccc
ggcaacgacgacaacgtggtgccgggactggtgatcgtcaccgaggccgacctcaccggc
aaccgcgtcgtcaccgagggccgcaagacccccgtcaagcgccgcaaccaggttgatccg
ctcgccctgaacgccggcgacttcgtcgtccacgaccagcacggcatcggcaagttcgtc
gagatggtcgagcgcacggtcggtggtgcccgccgcgaatatctcgtcatcgagtacgcg
cccggcaagcggggccagcccggcgacaagctgttcgtgccgatggaacagctcgaccag
ctctcccggtacgtcggaggtgagctgccgtccgtcagcaagctcggcggatccgactgg
gccaacaccaagcgcaaggcgcgcaaggcggttcgcgagatcgccggcgagctcgtacgg
ctgtacgcggcgcggcaggcatcacccggccacgcgttcgcgcccgactcgccgtggcag
aaggagatggaggacgccttccccttcaccgagacgcaggaccagctcacggtgatctcc
gaggtcaagaccgacatggagaagccggtgccgatggaccgcgtcgtgatcggcgacgtg
gggtacggcaagaccgagatcgcggtgcgcgcggcgttcaaggccgtgcaggacggcaag
caggtcgcggtgctcgtccccacgaccctgctcgcgcagcagcacctgcagaccttcacc
gagcggatggcggccttccccgtcacggtgaagggactgagccggttcaccgacgcgtcc
gagtcgcgcgccgtcaccgagggcatggccgacggtaccgtcgacatcgtcgtcggtacc
caccgcttgctccaaaccgggatccgctggaaggacctcggtctcgtgatcgtcgacgag
gagcagcgtttcggcgtcgagcacaaggaacacatcaaggcgctgcgcacgcacgtcgac
gtgctcacgatgtcggccacaccgatcccgcgaaccctcgagatgagcatggccgggatc
cgcgagatgtcgaccatcctcaccccgcccgaggaacggcacccgatcctcacctatgtg
ggtgcgtacaacgacaagcaggtcgccgcggcgatccgccgagagctgctgcgcgacggc
caggtcttctacgtccacaaccgggtgagctcgatcgacaaggccgccaagcgactccgc
gatctcgtccccgaggcgcggatcgcggtcgcgcacgggcagatgaacgaggagacgctc
gagaagacggtgcaggggttctggcagcgcgagttcgacgtgctggtgtgcacgacgatc
gtcgagaccggcctcgacatctcgaacgccaacacgctcatcgtcgaacgtgcggattcg
ctcggcctgtcgcagctgcaccagttgcgcggccgtgtcgggcgttcgcgtgagcgcggt
tacgcgtacttcctgtatccggcggagaagccgctgacggagaccgcctacgaccggctc
gccacgatctcgcagaactccgatctcggcgcgggtatggccgtggccatgaaggacctc
gagatccgtggcgccggtaacgttctcggcgccgagcagtccggtcacgtcgccggcgtg
ggcttcgacctgtatgtgcggctcgtcggcgaggccgtcgaggcgtaccgggccgcggcc
gacggccggacggtcaccaccgacgaagcgcccaaggaggtgcggatcgaccttcccgtc
gacgcgcacatcccggccgactatgtcgcatccgaccggctgcgcctcgaggcgtaccgc
aagctcgccgccgcgaacgacgacgccgcgatcgccacggtcgtcgacgaactcgtcgac
cgttacggtccgctgcccgaggaggtgcagcggctcgtgtccgtcggccggttgcggttg
ctgtgccgcgagtacggcctcgaggaggtcgcggtcaccggcacccagatccggatctca
ccgatggagctgcccgactcgaagcagatgcggctcgagcggttgtacccgggagcgcag
taccgcgcgacgagcggtctcgtgcagctgccgatcccgcggaccggcggggtcggatcg
gatcgggtgcgcgacgtggcgctgctgcagtacatcgccgacttcctgctcgccctcgac
ggcaagccgcagggctcggtggatctgaacagcgcggcgacggtgaatgcatga
DBGET
integrated database retrieval system
