Rhodococcus rhodochrous: 4535765_01404
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Entry
4535765_01404 CDS
T05521
Symbol
deaD
Name
(GenBank) dead/deah box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rrt
Rhodococcus rhodochrous
Pathway
rrt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rrt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
4535765_01404 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rrt03019
]
4535765_01404 (deaD)
03009 Ribosome biogenesis [BR:
rrt03009
]
4535765_01404 (deaD)
Enzymes [BR:
rrt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
4535765_01404 (deaD)
Messenger RNA biogenesis [BR:
rrt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
4535765_01404 (deaD)
Ribosome biogenesis [BR:
rrt03009
]
Prokaryotic type
rRNA helicases
4535765_01404 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
UvrA_inter
HEM4
CMS1
Flavi_DEAD
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
SNV15600
LinkDB
All DBs
Position
1:1491990..1493870
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AA seq
626 aa
AA seq
DB search
MSEIQDAPDQETAALTFADLDIDARVLQALSDVGYESPSPIQAATIPPLLEGRDVVGLAQ
TGTGKTAAFAVPILSRIDTSVKRPQALVLAPTRELALQVAEAFGKYSVHIPGLNVLPIYG
GQAYGVQLSGLRRGAQVIVGTPGRVIDHLAKGTLDISELEFLVLDEADEMLTMGFQEDVE
RILADTPDTKQVALFSATMPGAIRRLSKQYLKDPQEITVKSKTTTSANISQRWVLVSHQR
KLDALTRVLEVETFEAMIIFVRTKQATEDLAERLRARGFSAAAINGDIVQAQRERTINQL
KNGSLDILVATDVAARGLDVERISHVVNYDIPHDTESYVHRIGRTGRAGRTGDALLFVAP
RERHLLKAIERATRQPLAEMQLPTVEDVNAQRVSKFNDSITEALTSDHLQLFRTFVEDYE
REHDVPLADIAAALAVLSRDGESFLMEAEPEPVAPPRRDREPRERPPRRFDDGPKVGRDG
QEMTTYRIAVGKRHRVQPGAIVGAIANEGGLRRGDFGHISIRADHSLVELPKDLSPQTLD
ALRSTRISGVLIQLQPDSGAPTGRPSSYRGRDDRRGDDRRGGDRRDHGKRDRGGKREYGD
SRGGRSGDFTHRSDRNDRGGRGGYRD
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaaattcaagacgcccccgaccaggagaccgcagctctcacgtttgccgatctc
gacatcgatgcccgtgtgctgcaagctctttcggacgtgggttacgagtccccgtcgccg
atccaggcggcgaccatcccaccactgctggagggacgggacgtcgtcggtctcgctcag
accggcaccggcaagaccgccgccttcgcagtgccgatcctctcgcgtatcgacacctcc
gtgaagcggccccaggcgctggtgctggcgcccacccgagagctcgcgctgcaggtcgcg
gaggctttcggtaagtattccgtccatatcccgggcctgaacgtcctgcccatctacggc
ggccaggcgtacggtgtacagctgtccggtctccgccgcggcgcccaggtcatcgtcggt
acccccggacgtgtgatcgatcacctcgccaagggcaccctcgacatctccgagctcgag
ttcctcgtcctcgacgaggccgacgagatgctcaccatgggcttccaggaggacgtcgag
cgcatcctcgccgacacccccgacaccaagcaggtcgcgctgttctccgcgaccatgccg
ggcgcgatccgccggctgtcgaaacagtacctcaaggatccgcaggaaatcaccgtcaag
tcgaagacgacgacgtcggcgaacatctcccagcggtgggtcctcgtctcccaccagcgc
aagctcgacgcgctgacccgtgtcctcgaggtcgagaccttcgaggcgatgatcatcttc
gtgcgcacgaagcaggccaccgaggatctggccgagcggttgcgcgcccgcggtttctcc
gcggccgcgatcaacggcgacatcgtgcaggcccagcgcgagcgcacgatcaaccagctc
aagaacggttcgctcgacattctcgtcgccaccgacgtcgccgcgcgtggtctcgacgtc
gagcgcatcagccacgtcgtcaactacgacatcccgcacgacaccgagtcgtacgtgcac
cgcatcggccgtacgggccgcgccggccgtaccggcgacgccctgctgttcgtcgctccg
cgtgagcggcacctgctcaaggcgatcgagcgggctacccgtcagccgctcgccgagatg
cagctgcccacggtcgaggacgtcaacgcccagcgcgtgtcgaagttcaacgactcgatc
acagaggcgctcacctccgatcacctgcagctgttccgcacgttcgtcgaggactacgag
cgcgagcacgacgtgccgctcgccgacatcgccgccgcactggcggtcctgtcacgcgac
ggcgagtcgttcctcatggaggccgaacccgagccggtcgcaccgccgcgccgcgaccgc
gaaccgcgcgagcgtccgccgcgtcgcttcgacgacgggccgaaggtcggtcgcgacggc
caggagatgaccacctaccgcatcgccgtgggcaagcgtcaccgcgtgcagcccggtgcg
atcgtcggtgccatcgccaacgagggcggactgcgccgcggcgacttcgggcacatcagc
atccgtgccgatcacagccttgtcgagctgccgaaggatctgtcgccgcagaccctcgac
gcgctgcgctccacccgcatctcgggtgtgctcatccagctgcagcccgactccggcgca
ccgaccggacgtccgagctcgtatcgcggacgcgacgaccgtcgcggcgacgatcgacgc
gggggagaccggcgcgatcacggcaagcgcgaccgcggcggcaagcgtgagtacggcgac
agccgtggtggccgttccggcgacttcacgcaccgcagcgaccgcaacgaccgtggcggt
cgcggcggctaccgcgactga
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