Rhodococcus rhodochrous: 4535765_01683
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Entry
4535765_01683 CDS
T05521
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
rrt
Rhodococcus rhodochrous
Pathway
rrt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rrt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
4535765_01683 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rrt03021
]
4535765_01683 (rho)
03019 Messenger RNA biogenesis [BR:
rrt03019
]
4535765_01683 (rho)
Transcription machinery [BR:
rrt03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
4535765_01683 (rho)
Messenger RNA biogenesis [BR:
rrt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
4535765_01683 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
Spore_III_AA
AAA_25
NACHT
Pentapeptide_2
Motif
Other DBs
NCBI-ProteinID:
SNV16726
LinkDB
All DBs
Position
1:1814622..1816607
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AA seq
661 aa
AA seq
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MVLAELRTLAAELGIKGTSGMRKGDLIAAIKEKQGGGAAAPAEQPAAAQNTGAEKTTAPE
KTDAAVKTETAGKPETADKSEGAPSRGTRGRRGRAAADETATPEQKADAKPAEQKADAKS
GEEGSQEKSQGGQTSSGDNESDGNRRGRGRRGRRGGDNADQNQQNESADASDDGRQDRDS
QRERGQDRNSGDGSSRRDRNQGDRNQGDRNQGDRNQGDRNQDGGDRDGGNQGPRQGQDNR
GGDDEEGGRGRRGRRFRERRRGRDRGESGSDSREPEIREDDVLQPVAGILDVLDNYAFVR
TSGYLAGPNDVYVSMNMVRKNGLRRGDAITGAVRVPREGEQSNQRQKFNPLVRLDTVNGR
DVDSAKRRPEFNKLTPLYPNQRLRLETQPNILTTRVIDLVMPIGKGQRALIVSPPKAGKT
TVLQDIANAIAVNNPECYLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTSVAEL
AIERAKRLVEMGQDVVVLLDSITRLGRAYNNSSPASGRILSGGVDSTALYPPKRFLGAAR
NIENGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGT
RKDELLMSPDEFAVVHKLRRVLSGLDSHQAIDLLIDRLKKSKTNIEFLMNVAKTAPGALD
D
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atggtgcttgccgagttgcggactcttgccgccgagctcggaatcaagggcacctccggg
atgcgcaagggtgatctcatcgctgcgatcaaggagaagcagggcggcggcgccgccgca
cctgccgagcagcctgcagccgcgcagaacaccggtgccgagaagaccactgcccccgag
aagaccgacgcggcagtgaagaccgagacggcggggaagcccgagacggccgacaagtcc
gagggagcgccctcgcgtggcacccgcggtcgccgtggccgtgccgccgccgacgagacc
gccacacccgagcagaaggccgacgccaagccggccgagcagaaggccgacgcgaagtcc
ggcgaagagggttcgcaggagaagtcgcagggcggccagacctccagcggcgacaacgaa
tccgacggaaaccgtcgtggccgtggccgccgcggacgccgcggtggcgacaacgccgac
cagaaccagcagaacgagagcgccgacgcgtccgatgacggccgccaggatcgcgactcg
cagcgtgagcgtggccaggaccgcaactccggagacggctcctcgcgccgcgatcgcaac
cagggcgaccgcaaccagggcgaccgcaaccagggcgaccgcaaccagggcgaccgcaac
caggacggtggcgatcgcgacggcgggaaccagggtccgcgccagggccaggacaatcgt
gggggagacgacgaggaaggcggccgcggccgccggggccgtcgtttccgcgagcgtcgt
cgtggacgcgaccgcggcgagagcggttcggactcgcgcgagcccgagatccgcgaggac
gacgtcctgcagccggtcgccggcatcctcgacgtcctcgacaactacgcgttcgtccgc
acgtccggctacctcgccggcccgaacgacgtgtacgtctcgatgaacatggtgcgcaag
aacggcctgcgccgcggcgacgccatcaccggtgccgtgcgggttccccgcgagggcgag
cagagcaaccagcgccagaagttcaacccgctggtccgcctcgacacggtcaacggccgc
gacgtggattcggccaagcgccgccccgagttcaacaagctcacgccgctgtaccccaat
cagcgcctgcggctcgagacccagccgaacatcctcaccacgcgcgtgatcgacctggtc
atgccgatcggtaagggtcagcgcgcactcatcgtgtcgccgccgaaggccggtaagacc
accgtcctccaggacatcgcgaacgcgatcgccgtcaacaaccccgagtgctacctgatg
gtcgtgctcgtcgacgagcgccccgaagaggtcaccgacatgcagcgttcggtgaagggc
gaggtcatcgcctcgaccttcgaccgcccgccgtcagatcacacctcggtcgccgagctc
gccatcgagcgcgcgaagcgtctcgtggagatgggccaggacgtcgtggtgctcctcgac
tccatcacccgtctcggccgcgcgtacaacaactcgtcgccggcatccggacgcatcctc
tccggtggtgtcgactcgaccgcgctgtacccgccgaagcgtttcctcggtgctgcccgc
aacatcgagaacggcggatcgctcacgatcatcgccaccgcgatggtcgagaccggttcc
accggcgacaccgtgatcttcgaggagttcaagggcacgggtaacgccgagctcaagctc
gaccggaagatcgccgagcggcgtgtgttcccggcggtcgacgtcaacccatccggtacg
cgcaaggacgagctgctcatgagccccgacgagttcgccgtggtgcacaagctgcgccgc
gtgctctcgggcctcgattcgcaccaggcgatcgatctgctcatcgaccggctcaagaag
tccaagacgaacatcgagttcctcatgaatgtggcgaagaccgcaccgggggcactcgac
gactga
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