Rhodococcus rhodochrous: 4535765_01876
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Entry
4535765_01876 CDS
T05521
Symbol
recQ_1
Name
(GenBank) putative ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rrt
Rhodococcus rhodochrous
Pathway
rrt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rrt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
4535765_01876 (recQ_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rrt03019
]
4535765_01876 (recQ_1)
03400 DNA repair and recombination proteins [BR:
rrt03400
]
4535765_01876 (recQ_1)
Enzymes [BR:
rrt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
4535765_01876 (recQ_1)
Messenger RNA biogenesis [BR:
rrt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
4535765_01876 (recQ_1)
DNA repair and recombination proteins [BR:
rrt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
4535765_01876 (recQ_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
AAA_30
DprA_WH
SWI2_SNF2
Motif
Other DBs
NCBI-ProteinID:
SNV17473
LinkDB
All DBs
Position
1:complement(2027237..2029369)
Genome browser
AA seq
710 aa
AA seq
DB search
MTNSTDLLRDDAEHLLRELAGPDARLRDDQWVAIEALVVHRRRALVVQRTGWGKSAVYFI
SAKLLRRQGRGPTVIVSPLLALMRNQVAAAERAGVHAATINSGNVTEWSAIHERIAAGEV
DVLLVSPERLNNPDFRDQVLPSLARDAGLVVVDEAHCVSDWGHDFRPDYRRIRTLVAELG
DDIPVLATTATANDRVVADIAAQLGVGGSSDLGGSSSAGSGGTLVLRGGLDRPSLHLSVV
RIDEPARRAAWLAQHLKDLPGSGIVYALTVSAARDLAALLTDHGYAVAAYTGQTEPTERE
QLEADLLDNKVKALVATSALGMGFDKPDLGFVVHLGAPSSPISYYQQVGRAGRSTERAEV
VLLPGPEDRRIWQWFASVAFPDEALVRRVIAALDTERPVSTPALEPRVDLTRSRLEMVLK
VLDVDGAVKRVKGGWIATGQPWTYDEERYGRLEEARAAEQEAMLEYERTTECRMVFLRRQ
LDDPDLDTRSPGCGRCDNCIGSRWETSVGDDEVARTRARLERPGVDLPPRRQWPTGMSTL
GIPLSGRITDGPRPGRVLGRLSDLGWGPRLRELLDGPDREAPKAVVDASIAVLAAWDWED
RPTAVMAMDSPTHPLLVKSLASRLAQIGRLRDLGVLRRRSGNTEPTAANSAYRVAALIDA
WERPDNLGSSGPILLVDAVTDTGWTFTMAARTLVAAGADAVLPYALASPK
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgacgaactcgaccgacctgttgcgcgacgatgccgagcaccttctccgcgagctggca
ggccccgatgcccggctccgcgacgaccaatgggtcgccatcgaagcgctcgtggtgcat
cgccgccgcgccctcgtcgtccagcgcacgggctgggggaagtcggccgtctacttcatc
tccgcgaagctgctgcgccgccagggcaggggccccacggtgatcgtctcgccgctgctc
gccctgatgcgcaaccaggtcgcggccgccgagcgggccggggtccacgccgccacgatc
aactccggcaacgtcacggaatggtcggcgatccacgagcggatcgcggcgggagaggtc
gacgtcctcctcgtcagccccgagcgcctgaacaaccccgacttccgcgaccaggtgctg
ccgtccctcgcccgcgacgccggactggtggtcgtcgacgaggcgcactgtgtgtcggac
tggggacacgacttccggcccgactaccgccgcatccgcaccctcgtcgccgagctcggc
gacgacatcccggtgctggcgacgaccgcgaccgccaacgaccgggtggtcgccgacatc
gccgcccagctcggtgtcggcgggagcagcgacctcggtggaagcagcagtgccggttcc
ggcggcacgctcgtactgcgcggcggtctcgaccgtccgtcgctgcacctatcggtggtg
cggatcgacgaaccggcacgacgcgcggcgtggctcgcgcagcatctgaaggatctgccg
ggctcgggcatcgtgtacgcgctgacggtctccgccgcccgcgacctcgcggcgctgctc
accgaccacggctatgcagtggcggcatacaccggtcagaccgaaccgaccgagcgtgaa
cagctcgaggcggatctcctcgacaacaaggtcaaggcgctcgtcgcgacctcggcgctc
ggcatgggcttcgacaagcccgatctcggcttcgtggtgcacctcggcgccccctcgtcc
ccgatctcctactaccagcaggtcgggcgtgcgggtcgctccaccgagcgcgccgaggtg
gttctgctccccggcccggaggaccgccggatctggcagtggttcgcctcggtcgccttc
ccggacgaggcgctcgtacgacgcgtgatcgcagcgctcgataccgaacggccggtatcg
acacccgccctcgaaccgcgggtcgacctcacgcgctcccgcctggagatggtcctcaag
gtcctcgacgtggacggagcggtgaagagggtcaagggcggctggatcgccaccgggcag
ccctggacgtacgacgaggagcgctacgggcgcctcgaggaggcccgcgccgcggaacag
gaggcgatgctcgaatacgagcgcaccaccgaatgccgcatggtcttcctccgccgtcag
ctcgacgatcccgatctcgacacccggagccccggttgcggccggtgtgacaactgcatc
ggttcccggtgggagacgtccgtcggcgacgacgaggtcgcccggacccgcgcccggctc
gaacgccccggtgtggatctgccgccgcgccggcagtggcccacggggatgtcgaccctc
gggatcccgctgtccggccggatcacggacggtccgcgccccgggcgcgtgctgggccgg
ctgtcggatctgggatggggaccgcgactgcgcgaactgctcgacggaccggaccgcgaa
gcgccgaaggcggtggtcgacgcgtcgatcgcggtgctcgcggcgtgggactgggaggac
cggcccaccgccgtcatggccatggactcccccacacaccccctgctcgtcaagtcactt
gcgtcccgattggcacaaatcggacgattacgagatctaggtgtattgcgacgccgaagc
gggaatacggagccgacggcagcgaactcggcatatcgggtcgccgcactgatcgacgcg
tgggagcgacccgacaacctcgggtcgagtggtccgatccttctcgtcgatgcggtgacc
gacaccggctggacgttcacgatggcggcgagaactctcgtcgccgcgggagccgacgcg
gtgttgccgtacgcactcgcgagcccgaagtaa
DBGET
integrated database retrieval system
