Rhodococcus rhodochrous: 4535765_02240
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Entry
4535765_02240 CDS
T05521
Name
(GenBank) DNA end-binding protein Ku
KO
K10979
DNA end-binding protein Ku
Organism
rrt
Rhodococcus rhodochrous
Pathway
rrt03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rrt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
4535765_02240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rrt03400
]
4535765_02240
DNA repair and recombination proteins [BR:
rrt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
4535765_02240
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Ku
HC2
Zn_Ribbon_TF
UL11
DUF4604
Motif
Other DBs
NCBI-ProteinID:
SNV18736
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All DBs
Position
1:complement(2411084..2412124)
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AA seq
346 aa
AA seq
DB search
MRSIWKGSLAFGLVNVPVKVYSATESHDISFHQVHAKDGGRIKYQRVCTECGEVVPYQDI
DKAYDSEDGERVVLTDEDFDKLPAAEKHEIPVLQFVPTEQIDPILFEKSYYLEPDSSSPK
AYGLLAATLEQSDRTALVHFTLRQRTRLAALRTRDGLLILQTLLWPDEVRAAEFESLDDI
EKPKQRELAMAETLVESMSDDFDPTEFTDEYQVELRTLIDEALARGGEKVFQVAEPDTDE
EDAEVLDLVAALQRSVDAADKKVPSGSSSGGKKSSKDDDEDEDEGAKKKAPAKKTASKST
ASKSTAKKSPAKKSTAKKTASKSAAAKKSPAKKTAAKKTSGERKGA
NT seq
1041 nt
NT seq
+upstream
nt +downstream
nt
atgcggtcgatctggaaaggctcactcgcgttcggcctcgtcaacgtcccggtgaaggtg
tattcggccaccgagtcgcacgacatctccttccaccaggtgcacgcgaaggacggcggg
cggatcaaatatcagcgcgtgtgcaccgagtgcggtgaggtcgtcccctaccaggacatc
gacaaggcgtacgactccgaggacggcgagcgggtggtgctcaccgacgaggatttcgac
aagctccccgccgccgagaagcacgagatcccggtgctgcagttcgtgcccaccgagcag
atcgatccgatcctgttcgagaagtcctactatctcgaacccgattcgtcgtcgccgaag
gcctacggcctgctcgccgcgaccctcgaacagagcgaccggacggcgctggtgcacttc
acccttcgtcagcgcacccggttggcggcgctgcgcacccgcgacggactgctcatcctg
cagaccctgttgtggcccgacgaggtccgcgcggccgagttcgagtcgctggacgacatc
gagaagccgaagcaacgcgaactcgcgatggccgagaccctcgtcgagtcgatgtccgac
gatttcgatcccaccgagttcaccgacgagtaccaggtggaactgcgcaccctgatcgac
gaggccctcgcccgcggcggcgagaaggtcttccaggtcgccgaacccgacaccgacgaa
gaggacgccgaggtcctcgacctcgttgcggccctgcagcgcagcgtcgacgcggcggac
aagaaggtcccctccggttcgtcctccggcgggaagaagtcctcgaaggacgacgacgaa
gacgaggacgagggcgcgaagaagaaggcccccgcgaagaagaccgcatcgaagagcacg
gcgtcgaagagcacggcgaagaagagtcccgcgaagaagagcacagcgaagaagaccgcg
tccaagagtgcggcggccaagaagagtcctgcgaagaagacggccgccaagaagacctcc
ggcgaacgcaaaggcgcctga
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