Rhodococcus rhodochrous: 4535765_03149
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Entry
4535765_03149 CDS
T05521
Symbol
hupB
Name
(GenBank) histone-like bacterial DNA-binding protein hupb
KO
K03530
DNA-binding protein HU-beta
Organism
rrt
Rhodococcus rhodochrous
Brite
KEGG Orthology (KO) [BR:
rrt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rrt03032
]
4535765_03149 (hupB)
03036 Chromosome and associated proteins [BR:
rrt03036
]
4535765_03149 (hupB)
03400 DNA repair and recombination proteins [BR:
rrt03400
]
4535765_03149 (hupB)
DNA replication proteins [BR:
rrt03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
4535765_03149 (hupB)
Chromosome and associated proteins [BR:
rrt03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
4535765_03149 (hupB)
DNA repair and recombination proteins [BR:
rrt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
4535765_03149 (hupB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Bac_DNA_binding
HC2
HU-HIG
HU-CCDC81_euk_2
HU-CCDC81_euk_1
HU-CCDC81_bac_2
Motif
Other DBs
NCBI-ProteinID:
SNV21834
LinkDB
All DBs
Position
1:complement(3384387..3385127)
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AA seq
246 aa
AA seq
DB search
MNKAELIDVLTEKLGSDRRTATAAVEHIVDAIVRAVHDGKSVTITGFGVFEKRRRAARVA
RNPRTGETVKVKPTSVPAFRPGQSFKNIIAGTQKLPSSGPAVKRGAAAAAKKTAAAKKAA
KKTAAKKTTATKSTAAKKTTAAKKTTAAKSTPAKKTTATKSTAAKKTTAAKKTTAAKSTP
AKKTTATKSTAAKKTTAAKKTTAAKSTPAKKTTATKSTAAKKTAAKKSPAKKSPAKKTTA
RKSTKK
NT seq
741 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaggcagaactgatcgacgttctgaccgagaaactcggttcggacaggcgcacc
gccaccgcggccgtcgagcacatcgtggacgcgatcgttcgcgccgtgcacgacggtaag
agcgtcaccatcaccggattcggtgtcttcgagaagcgtcgccgggcggctcgtgtcgcg
cggaacccgcgcacgggcgagacggtcaaggtcaagccgacctcggtgccggccttccgt
cccggccagtccttcaagaacatcatcgcgggcacccagaagctcccctcttcgggtccg
gccgtgaagcgcggtgcagccgcagcggccaagaagaccgcggcagcgaagaaggcggcc
aagaagactgcggccaagaagaccacggcgacgaagtcgactgcggcgaagaagaccacc
gcggcgaagaagaccaccgcggccaagtcgactccggcgaagaagaccacggcgacgaag
tcgactgcggcgaagaagaccaccgcggcgaagaagaccacggcggccaagtcgactccg
gcgaagaagaccaccgccaccaagtcgaccgcggcgaagaagaccaccgcggcgaagaag
accacggcggccaagtcgactccggcgaagaagaccaccgccaccaagtcgaccgcggcc
aagaagaccgcggccaagaagagcccggccaagaagagcccggccaagaagaccacggcc
cgcaagagcaccaagaagtaa
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integrated database retrieval system
