Rhodococcus rhodochrous: 4535765_03616
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Entry
4535765_03616 CDS
T05521
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta subunit rpoc
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rrt
Rhodococcus rhodochrous
Pathway
rrt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rrt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
4535765_03616 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rrt03021
]
4535765_03616 (rpoC)
03400 DNA repair and recombination proteins [BR:
rrt03400
]
4535765_03616 (rpoC)
Enzymes [BR:
rrt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
4535765_03616 (rpoC)
Transcription machinery [BR:
rrt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
4535765_03616 (rpoC)
DNA repair and recombination proteins [BR:
rrt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
4535765_03616 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
SNV23089
LinkDB
All DBs
Position
1:complement(3918197..3922168)
Genome browser
AA seq
1323 aa
AA seq
DB search
MLDVNFFDELRIGLATAEDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITSVDDELRHNELSTLEAEMEVEKKAVADQRDADLEARAQKLEAD
LAELEAEGAKSDVRRKVKDGGEREMRQLRDRAQRELDRLDEIWTTFTKLKPKDLIVDEMI
YRELQDRYGEYFTGAMGAEAIQKLIENFDIDAEAESLRETIRSGKGQKKLRALKRLKVVA
AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PQVWDVLEEVINEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLFHLTRLVEDAPGAYR
AATADEPEQGVYSSPAEAQMAVDRGVLSVQAPIKVRLTQLRPPRDVESELFPEGWKFGQP
WTTQTTLGRVLFNELLPTNYAFVNDIMPKKRQAAIINDLAERYPMIVVAQTVDKLKDAGF
YWATRSGVTISMADVLVPPEKKDILERYETQADAIQRQYDRGKLSEDERRDSLVKLWQEA
TEEVGQVMEAHYPDDNPIPTIVKSGAAGNMTQIRSLAGMKGLVTNPKGEFIPRPIKSSFR
EGLTVAEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREVDCGTPRGIEMTI
AELARDATGQPTGELVRDAHIETSTYARTLATDAVDANGNVVVERGSDLGDPAIEALLEA
GIQKVKVRSVLTCDTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTF
HQGGVGEDITGGLPRVQELFEARVPKGKAPIADVSGRIRLEDDDRFYKITIIPDDGGEEV
VYDKLSKRQRLHVIRKADGTEGVLSDGDHVEVGQQLLEGSADPHEVLRVMGPRQVQVHLV
HEVQEVYRSQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLVERSEFEAANRRVVQ
EGGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLIGLKENVIIG
KLIPAGTGINKYRNIEVQPTEEARAAAYAIPAYDDQYYSPDGFGQNTGAAVPLDDYGYSN
DYR
NT seq
3972 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgatgaactccggatcggcctggccaccgccgaggacatc
cgtaactggtcgtacggcgaggtcaagaagccggagaccatcaactaccgcacgctcaag
cccgagaaggacggcttgttctgcgagaagatcttcggtcccacccgggactgggagtgc
tactgcggcaagtacaagcgtgtccgcttcaagggcatcatctgcgagcgctgcggcgtc
gaggtgacccgcgccaaggtccgccgtgagcgcatgggccacatcgagctcgccgctccg
gtgacgcacatctggtacttcaagggtgtgccgagccgcctcggctacctgctcgacctc
gcgccgaaggatctcgagaagatcatctacttcgccgcgtacgtcatcacgtccgtcgac
gacgagctgcgccacaacgagctctccactctcgaagccgagatggaggtcgagaagaag
gcggtcgccgaccagcgcgacgccgacctcgaggcccgtgcgcagaagctcgaagccgac
ctcgccgaactcgaggccgagggcgccaagtccgacgtccgccgcaaggtcaaggacggc
ggcgagcgcgagatgcgtcagctccgcgaccgtgcgcagcgcgagctcgaccgtctcgac
gagatctggacgaccttcacgaagctgaagccgaaggatctgatcgtcgacgagatgatc
taccgcgagctgcaggaccgctacggcgagtacttcaccggtgccatgggtgccgaggcg
atccagaagctcatcgagaacttcgacatcgacgccgaggccgagtcgctgcgcgagacc
atccgcagcggcaagggccagaagaagctccgtgctctcaagcgcctgaaggtcgtggcg
gcgttccagcagtccggcaactcgcccatgggcatggtgctcgacgccgtgccggtgatc
ccgccggaactgcgtccgatggtgcagctcgacggtggccgcttcgcgacctccgacctc
aacgacctgtaccgccgcgtcatcaaccgcaacaaccgcctcaagcgactgatcgacctc
ggtgcccccgagatcatcgtcaacaacgagaagcggatgctgcaggagtcggtcgacgcc
ctgttcgacaacggccgtcgtggccggccggtcaccggtcccggtaaccgtccgctcaag
tcgctgtccgatctgctcaagggcaagcagggccgcttccgtcagaacctgctcggtaag
cgcgtcgactactcgggccgttcggtcatcgtcgtcggtccgcagctcaagctgcaccag
tgcggtctgccgaagctcatggcgctcgagctgttcaagccgttcgtgatgaagcgcctc
gtcgacctcaaccacgcgcagaacatcaagtccgccaagcgcatggtcgagcgtcagcgc
ccgcaggtgtgggacgttctcgaagaggtcatcaacgagcacccggttctgctgaaccgt
gctcccacgctgcaccgcctcggtatccaggcgttcgagccgcagctcgtcgagggcaag
gccatccagctgcaccccctcgtgtgtgaggccttcaacgccgacttcgacggcgaccag
atggccgtgcacctcccgctgtccgcggaggcgcaggccgaggcccgcatcctgatgctg
tcgtcgaacaacatcctgtcgccggcatcgggccgcccgctggccatgccgcgtctggac
atggtgacgggtctgttccacctgacccgtctggtcgaggacgcccccggcgcctacagg
gccgcgaccgccgacgagcccgagcagggcgtctactcgtcgccggccgaggctcagatg
gccgtcgaccgtggcgtgctgtcggtccaggccccgatcaaggtgcgcctgacccagctg
cgtccgccgcgcgacgtcgagagcgagctgttcccggagggctggaagttcggtcagccg
tggaccacgcagaccaccctcggtcgcgtgctgttcaacgagctgctgccgacgaactac
gcgttcgtcaacgacatcatgccgaagaagcgccaggccgcgatcatcaacgacctggcc
gagcggtacccgatgatcgtcgtcgcgcagaccgtcgacaagctcaaggacgccggcttc
tactgggccacgcgttcgggtgtcaccatctcgatggcggacgtgctcgttccgccggag
aagaaggacatcctcgagcggtacgagacgcaggccgatgccatccagcggcagtacgac
cgaggaaagctctcggaggacgagcgtcgcgattcgctcgtcaagctgtggcaggaagcg
accgaagaggtcggtcaggtcatggaggcgcactacccggacgacaacccgatccccacg
atcgtcaagtccggtgctgcgggcaacatgacccagatccgctcgctcgcgggcatgaag
ggtctggtgacgaacccgaagggcgagttcatcccgcgcccgatcaagtcctccttccgt
gagggcctgaccgtcgccgagtacttcatcaacacgcacggcgcgcgtaagggtctcgcc
gacaccgctctccgtaccgccgactcgggttacctgacccgtcgtctggtcgacgtctcg
caggacgtcatcgtccgcgaggtcgactgcggcacgccgcgcggcatcgagatgaccatc
gccgagctcgcacgcgacgcgaccggtcagccgaccggtgagctcgtgcgcgacgctcac
atcgagaccagcacctacgcccgtacgctggcgacggacgcggtcgacgcgaacggcaac
gtcgtcgtcgagcgtggttccgacctcggcgacccggcgatcgaggcgctgctcgaggcc
ggtatccagaaggtcaaggtccgctcggtcctgacctgcgacaccggcaccggcgtctgc
gcgacctgctacggccgttcgatggcgacgggcaagctcgtcgacatcggcgaggccgtc
ggtatcgtcgccgcccagtcgatcggtgagcccggtacgcagctgacgatgcgtaccttc
caccagggtggcgtcggtgaggacatcaccggtggtctgccccgcgtccaggagctgttc
gaggcccgcgtccccaagggcaaggccccgatcgccgacgtctccggccgcatccgcctc
gaggacgacgatcgtttctacaagatcacgatcatccccgacgacggtggcgaggaggtc
gtgtacgacaagctgtccaagcgtcagcgtctgcacgtcatccgcaaggccgacggcacc
gagggtgttctctcggacggcgatcacgtggaggtcggtcagcagctcctcgagggctct
gccgatccgcacgaggtgctgcgcgtgatgggcccgcgtcaggttcaggtccacctggtc
cacgaggtccaggaggtctaccggagccagggcgtgtcgatccacgacaagcacatcgag
gtcatcgtgcgccagatgctgcgtcgcgtgacgatcatcgattcgggctcgacggagttc
ctgcccggttcgctcgtcgagcgcagcgagttcgaggctgcgaaccgccgtgtggtccag
gagggtggcgagccggctgccggccgtccggtcctcatgggcatcacgaaggcgtcgctg
gccaccgactcgtggctgtcggcggcgtccttccaggagaccactcgcgtgctgaccgac
gcggcgatcaactgccgctcggacaagctgatcggtctcaaggagaacgtgatcatcggc
aagctgatccccgccggtaccggtatcaacaagtaccggaacatcgaggtccagccgacc
gaggaggcccgcgcggccgcgtacgccatcccggcgtacgacgaccagtactactcgccg
gacggcttcggccagaacaccggcgctgcagtgccgctggatgactacggttactccaac
gactaccggtag
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