Rhodospirillum rubrum ATCC 11170: Rru_A1571
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Entry
Rru_A1571 CDS
T00310
Name
(GenBank) metallo-beta-lactamase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
rru
Rhodospirillum rubrum ATCC 11170
Pathway
rru03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rru00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Rru_A1571
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rru03019
]
Rru_A1571
Messenger RNA biogenesis [BR:
rru03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Rru_A1571
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
HcgB
Motif
Other DBs
NCBI-ProteinID:
ABC22371
UniProt:
Q2RU24
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All DBs
Position
1852294..1853976
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AA seq
560 aa
AA seq
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MADNSPPVPPRFEKNALYFVPLGGAGEIGMNLNLYAHQGKWLMVDLGVTFGNETTPGVDI
ILPDPSFIEERKGDLVGLVLTHAHEDHVGAVAYLWPYLECPVYATPFTAEFLRHKLREEG
IEPDVKLIEIPLGGRFTVGPFDIEMITTTHSIPEPNHLAIRTTAGTVLHTADWKFDPEPL
VGPPADEAALRRLGDEGVLAMVGDSTNIFTEGHSASEGDVRRSMIDLFARFQGRIAVGCF
ASNIARMETIALAAKANGREVALVGRSLWRMMETARTCGYLKGCPAFLGDEEAAKLPRDK
VVYICTGSQGEPRAALKRIASGSHPYVSLSAGDVVIFSSRVIPGNERSILQLQNQLVEMG
VKLITSRDAMVHVSGHPGAEEVRSLYGMVRPSIALPVHGEFLHLDHHADVARDLGVAHVV
RITNGAVVRLDGAEPTVVGKVPFGRLALDGDRLLQIDCEIIRDRKRMGYNGSVAVSLAID
DKGKLLGTPKISARGLLDPEDDADEVADLTNRVRGAVNAVRPADRKDDAAVAEAVRLAVR
RVFRQGQNRRPVTDIHVLRV
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atggctgacaattccccgcccgtgccgccccgtttcgaaaaaaacgccctttatttcgtg
cctttgggcggcgccggcgagatcgggatgaacctcaatctctatgctcatcagggtaaa
tggctgatggtcgaccttggggtgaccttcggcaacgaaaccaccccgggcgtcgacatc
atcctgcccgatccgtcgttcatcgaggaacgcaagggcgatctggtcggcctggtgctg
acccatgcccatgaggaccacgtcggcgccgtggcctatctgtggccctatctggaatgc
ccggtctacgccacgccctttaccgccgagttcctgcgccacaagctgcgcgaggagggc
atcgagcccgacgtgaaattgatcgagattccgctgggcggccgcttcaccgtcggcccc
ttcgatatcgagatgatcaccaccacccattcgatccccgaacccaaccatctggcgatc
cgcaccacggccggaacggtgctgcacaccgccgattggaagttcgatcccgagccgctg
gtcggcccgccggccgacgaggcggccttgcggcgcctgggcgacgagggcgtgctggcc
atggtcggcgacagcaccaatatcttcaccgaaggccattccgcttccgaaggcgatgtc
cggcgctcgatgatcgatctgttcgcccgcttccagggccgcatcgccgttggctgcttc
gcctcgaacatcgcgcgcatggaaaccatcgccctggccgccaaggccaatggccgcgag
gtcgccctggtcgggcggtcgctgtggcggatgatggagacggcgcggacctgcggttat
ctcaagggctgcccggccttcctcggcgacgaggaggcggccaagctgccgcgagacaag
gtggtgtacatctgcaccggcagccagggcgaaccgcgggcggcgctcaagcgtatcgcc
agcggtagccacccctatgtcagcctgtcggccggcgatgtggtgatcttctccagccgg
gtcattcccggcaatgagcgctcgatcctgcagctgcaaaaccagttggtcgagatgggc
gtcaagctcatcacctcgcgcgacgccatggtccatgtctcgggccacccgggcgcggaa
gaggtgcgcagcctgtatggcatggtgcgtccgagcatcgccctgccggttcacggcgag
ttcctgcatcttgatcaccatgccgatgtcgcccgcgatctgggcgtcgcccatgtggtg
cggatcaccaatggcgccgtcgtccgccttgacggcgcggaacccaccgtggtcggcaag
gtgccctttggccgtttggcgctggatggcgatcggcttttgcagatcgattgcgagatc
atccgcgatcgcaagcgcatgggctataacggctccgtcgccgtttcgctggcgatcgac
gacaagggcaagctgctgggaacccccaagatcagcgcccgtggtctgcttgaccccgaa
gacgacgccgatgaggtcgccgatctgaccaaccgggtgcgcggcgccgtcaacgccgtc
cgccccgccgaccgcaaggacgacgccgccgtggccgaggcggtgcggctggcggtgcgc
cgggtcttccgtcaggggcagaaccgccgcccggtgaccgatattcacgttttgcgggta
tga
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