Rhodospirillum rubrum ATCC 11170: Rru_A2149
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Entry
Rru_A2149 CDS
T00310
Name
(GenBank) RNAse E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rru
Rhodospirillum rubrum ATCC 11170
Pathway
rru03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rru00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Rru_A2149
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rru03019
]
Rru_A2149
03009 Ribosome biogenesis [BR:
rru03009
]
Rru_A2149
Enzymes [BR:
rru01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Rru_A2149
Messenger RNA biogenesis [BR:
rru03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Rru_A2149
Ribosome biogenesis [BR:
rru03009
]
Prokaryotic type
rRNA processing factors
Rru_A2149
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
SRP54_N
DUF1168
Motif
Other DBs
NCBI-ProteinID:
ABC22949
UniProt:
Q2RSE6
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All DBs
Position
2496163..2498832
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AA seq
889 aa
AA seq
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MTKRMLIDANHPEETRVVVLDGTRLDEFDVETSTKKQLKGNIYLAKVVRVEPSLQAAFVE
YGGNRHGFLAFNEIHPDYYQIPVADREKLIAEEALEAAADDDDEADSVETLGGDEAEDSA
PAPRAKSRVSRSYKIQEVIKRRQIMLVQVVKEERGNKGAALTTYLSLAGRYCVFMPNTTR
GGGVSRKITSATDRKRLKSIMGELIGPKGSAVILRTAGSERSRAEIRRDHDYLLRTWDSI
RQTTLASRAPCLIHEEGSLIKRAIRDIYSRDIEEILVEGDAGYRTAKDFMKMLTPSHAKK
VQPYKDEIMPLFHRYQVESQMDAMHSPIAQLRSGGYLVINQTEALVAIDVNSGRSTRERN
IEETAYKTNLEAADEIARQLRLRDLSGLIVIDFIDMDDPRSNANVERRVKDALRNDRARI
QLGRISHFGLLEMSRQRLRPSLMETSFQPCPHCHGSGSLRSVESTAIHILRIIEEEGVRR
RSSEVTVTVPTAIALYILNNKRTVLAAIEARYDFQVFLLGDDTLIVPDYRMDRVKAEREG
LDALPAAAPPPTAPVAALPAPEVLEDEDEDEGTVEDEAFAEENGQNGADADGQGRKRRRR
RRRRRKDQDGVEIEGSSVDDEEGAPEGTADSTEDEGADDEGETGDEAEDTGDELDPADGS
LSDRDGQSRRRRRRRGRRGRRDDTGNGLPEPAVPASTADTLPLDDDSIESAEIDDDPTAE
DEIISSTDADSAPAGEDSAAAITDELGREGRRPPRRRRPRRKDRGVETNRAIALDASDAE
AGPATAETDLAAFDDAPDAEAPFAEPLGDERLLDETPAEIAEAEAEVETAETDIDRDPAD
GEPPTAPVAPPPVAVVKTPDPAAAAAPPAAVPSSDQPRRVGWWSKLMSS
NT seq
2670 nt
NT seq
+upstream
nt +downstream
nt
atgaccaagcgcatgcttatcgatgcgaaccaccccgaagaaacgcgggtcgtggttctg
gacggtacccgtctcgacgagtttgacgtcgagacttcaacgaagaaacagcttaaggga
aacatctacctcgccaaagtcgtccgcgtcgaaccctcgctccaggccgctttcgtcgaa
tacggcggcaatcgccatggcttcctggccttcaacgagatccacccggactattaccag
atccccgtcgccgaccgcgaaaagctgatcgccgaggaggcgcttgaagccgccgccgat
gacgatgacgaggccgacagcgtcgagaccctgggcggcgatgaagccgaagactcggcc
cccgctccgcgcgccaaatcgcgggtcagccgcagctataagatccaagaggtgatcaag
cgccggcagatcatgctggtgcaggtcgtcaaggaggagcgcggcaacaagggcgcggct
ctgaccacctatctgtcgctggccgggcgctattgcgtgttcatgcccaataccacgcgc
ggcggcggcgtttcgcgcaagatcaccagcgccaccgatcgcaagcgcttgaagtcgatc
atgggcgaattgatcggccccaagggcagcgccgtcatcttgcgcacggcgggcagcgag
cggtcgcgggccgaaatccgccgcgaccatgactatctgctgcgcacctgggattccatc
cggcagacgacgctggcctcgcgcgccccttgcctgatccacgaggaaggcagcctgatc
aagcgcgccatccgcgatatctattcccgcgacatcgaggaaatcctggtcgaaggcgat
gccggttaccgcaccgccaaggatttcatgaagatgctgacgccttcgcacgccaagaag
gtccagccctacaaagacgagatcatgccgcttttccaccgctatcaggtggaaagccag
atggatgccatgcattcgccgatcgcccagttgcgctcgggcggctatctggtcatcaac
caaaccgaggcgctggtcgccatcgacgtcaattcgggccgctcgacgcgcgagcgcaat
atcgaagagaccgcctataagaccaatctggaagccgccgacgaaatcgcccgccagctg
cgcctgcgcgacctgtccgggctgatcgtcatcgacttcatcgatatggacgatccgcgc
tccaacgccaatgtcgagcgccgggtcaaggacgcgctgcgcaacgaccgcgcccgcatc
cagcttggccgcatcagccatttcggcctgcttgaaatgtcgcgccagcggctgcgcccc
agcctgatggaaaccagcttccagccctgcccgcattgccatggctcggggtcgctgcgc
tcggtcgaatccacggccatccatatcctgcgcatcatcgaggaagagggcgtgcgccgg
cgttcgagcgaggtcacggtcaccgtgccgacggcgatcgccctttacatcctaaacaac
aagcgcaccgttctggccgccatcgaggcgcgctatgacttccaggtgttcttgctgggc
gacgacacgctgatcgttcccgattatcgcatggaccgggtgaaggccgagcgcgagggc
ttggatgccctgcccgccgccgcccccccgccgaccgcgcccgtcgccgccctgccggcg
cccgaggtcctggaagacgaggacgaggacgagggcaccgtcgaggacgaggccttcgcc
gaagagaacggccaaaacggcgccgatgccgatggacagggccgcaagcgccgccgccgt
cgccgccgtcgccgcaaggatcaggacggcgtggagatcgaaggctcgtccgtcgacgac
gaagagggcgcgcccgaaggcacggctgactcgaccgaggacgagggcgccgatgacgag
ggtgagaccggcgacgaggccgaggacacgggcgacgagttggacccggccgacgggtcg
ctgagcgatcgtgatggccagtcgcgccgccgccgccgtcgccgcggccgtcgcggtcgt
cgcgacgacacgggcaacggcttgcccgagcccgccgtgccggcctcgaccgccgatacc
ctgccccttgatgacgactcgatcgaaagcgccgagatcgacgacgatccgaccgccgag
gacgagatcatctcgtcgaccgacgcggacagcgccccggccggcgaggactctgcggcg
gcgatcaccgatgagcttggccgcgagggtcgccgtccgccgcgtcgccgtcgcccccgc
cgcaaggatcggggcgtcgagaccaaccgcgccatcgcccttgacgccagcgacgccgaa
gccggcccggcgaccgccgaaacggatctcgccgccttcgacgacgccccggacgccgag
gcgcccttcgctgagcccttgggcgatgagcggttgctcgacgagacccccgccgagatc
gccgaggccgaggccgaagtcgagaccgccgagacggacatcgaccgcgaccccgccgac
ggggaaccgccgaccgcacccgtcgcgccgccgccggtcgccgtcgtcaagacccccgac
cccgcggccgccgccgccccgccggccgcggtcccgtcttccgaccaaccccgccgcgtt
ggctggtggtcgaaactgatgtcgtcctga
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