Rhodospirillum rubrum ATCC 11170: Rru_A2408
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Entry
Rru_A2408 CDS
T00310
Name
(GenBank) RecJ exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
rru
Rhodospirillum rubrum ATCC 11170
Pathway
rru03410
Base excision repair
rru03430
Mismatch repair
rru03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rru00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Rru_A2408
03430 Mismatch repair
Rru_A2408
03440 Homologous recombination
Rru_A2408
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rru03400
]
Rru_A2408
DNA repair and recombination proteins [BR:
rru03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Rru_A2408
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Rru_A2408
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Rru_A2408
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Peripla_BP_6
Motif
Other DBs
NCBI-ProteinID:
ABC23208
UniProt:
Q2RRN7
LinkDB
All DBs
Position
complement(2806942..2808762)
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AA seq
606 aa
AA seq
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MTDILTPAAPPALPTRDAAFLGVERSRGGRRWVLRPGDERQALAISQRLGVPEVVGRVLT
GRGVQVEEADGFLTPTLRALLPDPGHLLDMDKAVARLSKAVRDKETIAIFGDYDVDGATS
TALMHRFFRSLGARVLIHIPDRVLEGYGPNAPALEALAAKGARVVLTVDCGISAFDALRA
AKAAGLDVVVCDHHEARTELPAAVAVVNPKRLDEASPHTHLAAVGVAFLMAVAINRDLRD
SGWFAAEQRPPPDLMALLDLVALGTVCDMVPLIGVNRALVQQGLKVIAKRTNPGIAALAE
VSGVRDRVDAFHLGFMLGPRVNAGGRVGQAGMGAALLSSEDPLECLDFARQLDAFNGARK
EIEAAVLHQAIEQVEAAPANDLPLVFASGTDWHPGVVGIVASRLKERYGLPACAVALDGG
LAKGSGRSVGGVDLGRVVIAAREAGVLEAGGGHAMAAGFSLRTDRLEEFRQFLGERLKDQ
VAALALVASLDLDGVLDVRGANAQLVRALSQAGPYGSGNPEPRFAVANARVGKVDVVGMG
HVRCFLNGPSGGSLKAMAFKAADSEIGHALLTAHGASLHVAGTLRLDSFQGRETVVLVVD
DVAPCS
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatattctgactccggcggccccgcccgcccttccgacccgcgatgccgcattt
ctcggggtcgagcgttcgcgcggcggccggcgatgggtcttgcgcccgggcgatgagcga
caggccttggcgatcagccagcgcctgggggttcccgaggttgttggtcgggttctgacc
ggtcgcggcgtccaggtcgaggaggccgacggttttctcacgccgacgttgcgcgccctg
ctgcccgatcccggccatctgctggatatggacaaggcggtggcccgcctgagcaaggcg
gtgcgcgacaaggagacgatcgccatcttcggcgattacgacgtcgacggggcgacctcg
acggccctgatgcaccgcttcttccgcagcctgggcgcccgggtgctgatccatattccc
gaccgggtgcttgagggctatggccccaatgctccggccctggaggccttggccgccaag
ggggcgcgggtggttcttacggtcgattgcggcatcagcgcctttgacgccctgcgcgcg
gccaaggcggcggggcttgatgtcgttgtttgcgaccaccacgaggcgcgcaccgaactg
cccgccgccgtcgccgtggtcaatcccaagcgccttgatgaggccagcccccatacccac
ctcgccgccgttggcgtggccttcctgatggcggtggcgatcaaccgcgatctgcgcgac
agcggctggttcgccgccgagcagcggccgccgcccgatctgatggccttgctcgatctg
gtggcgcttggcacggtttgcgacatggtgccgctgatcggcgtcaatcgcgccctggtc
caacaggggctgaaggtgatcgccaagcgcaccaatcccggcatcgccgccctggccgag
gtgtcgggcgtgcgcgaccgggtcgacgcctttcatctgggattcatgctggggccgcgg
gtcaatgccggcggccgggtggggcaggccggcatgggcgcggccctgttgtcgagcgag
gatccgctggaatgcctggatttcgcccgccagcttgacgccttcaatggcgcgcgcaag
gaaatcgaggcggcggtcctgcatcaggcgatcgaacaggtggaagccgcccctgccaat
gatctgccgctggttttcgccagcggcaccgattggcatcccggcgtcgtcggcatcgtc
gccagccggctcaaggaacgctatggcttgccggcctgcgccgtcgccctggatggcgga
ctggccaaggggtcgggccgctcggtcggcggcgtcgatcttggccgggtggtgatcgcc
gcccgcgaggccggcgtgcttgaggccgggggcgggcacgccatggccgccggtttcagc
ttgcgcaccgatcgcctggaggagtttcgccagttcctgggcgagcggctgaaggatcag
gtggcggcgctcgccctggtcgcctcgctcgatctcgatggggttctcgatgtgcgcggc
gccaatgcccaattggtgcgcgccctgtcgcaggccggcccctatggctcgggcaatccc
gaaccgcgcttcgccgtcgccaatgcccgcgtcggcaaggtcgatgtcgtcggcatgggc
catgtccgctgtttcctcaacggtccctcggggggctcgttgaaggcgatggctttcaag
gccgccgattccgaaatcggccacgccctgctcaccgcccatggcgcctcgctgcatgtg
gcgggaaccctgcgcctcgatagcttccaggggcgggagaccgtcgtcctggtggttgac
gacgtcgccccctgctcctga
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