Rathayibacter rathayi: C1O28_03450
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Entry
C1O28_03450 CDS
T05845
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rry
Rathayibacter rathayi
Pathway
rry03420
Nucleotide excision repair
rry03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rry00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C1O28_03450
03430 Mismatch repair
C1O28_03450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rry03400
]
C1O28_03450
Enzymes [BR:
rry01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C1O28_03450
DNA repair and recombination proteins [BR:
rry03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
C1O28_03450
MMR (mismatch excision repair)
Other MMR factors
C1O28_03450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
PhoH
Motif
Other DBs
NCBI-ProteinID:
AZZ48374
UniProt:
A0ABD6WBW5
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All DBs
Position
691257..692957
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AA seq
566 aa
AA seq
DB search
MSLLDGLDEGQREAAEALLGPVCVLAGAGTGKTRTITHRIAHGVATGVYTPARVMALTFT
SRAAAELRSRLRVLGAGAVQARTFHAAALSQLGYFWPQLVGGTMPQLLDGKARLLGHAAE
RLRLKLDTATLRDLSAEIEWRKVSALSLEQYAVAASTRPLPGKLTLEQTVALVDEYEGLK
DQRRQIDFEDVLLVTAGMLESEPAMAMQVREQYRFFVVDEYQDVSPLQQRLLELWLGDRS
DLCVVGDASQTIYSFAGARADYLLDFPARWPAATVVRLEENYRSALPIVQTANRLMRGRP
GALSLHAVTAGEAPEPAIDAYPDDIAEARGIAARVAGDIEAGVRASDIAVLFRTNSQSAV
IEHALHERGVSAHMRGGKRFFDLPEVKQAVMQLRAASVSISGEPLFKSVSDVLRSLGWSA
EPPAAPGAVRDRWESLDTLARLVDEAPADGSFRHFTDDLIARQQMHHEPDRAAVTLATLH
SAKGLEWESVHLMGLAEGLLPISYAAGLEAIDEERRLLYVGVTRARRRLRLSWSRSSIGR
VTRREPSRFLEELGTRTRGAAPAPAG
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
gtgagcctgctcgacggcctcgacgagggccagcgcgaggcagcggaggcgctcctgggc
cctgtctgcgttctcgccggcgcaggcacgggcaagacccgcaccatcacccaccgcatc
gcgcacggagtcgcgaccggcgtctacacgcccgcccgggtgatggccctcaccttcacc
agccgtgccgccgccgagctgcgctcgcgcctgcgcgtgctcggggccggcgcagtccag
gcgcgcaccttccacgccgccgcgctctcgcaactgggctacttctggccgcagctggtg
ggcgggacgatgccgcagctgctcgacgggaaggcgcgcctgctcgggcacgctgcggag
cgcctccgcctgaagctcgacaccgccacactgcgcgatctgtcggccgagatcgagtgg
cggaaggtgtccgctctctccctcgagcagtacgccgtcgccgcgagcacccgcccgctg
cccgggaagctcacgctggagcagaccgtcgcgctcgtggacgagtacgaggggctgaag
gaccagcgccgccagatcgacttcgaggacgtgctgctggtcacggccggcatgctcgag
tcggagcccgcaatggcgatgcaggtgcgcgagcagtaccgcttcttcgttgtcgacgaa
taccaggacgtctcgcccctgcagcaacgcctcctcgagctgtggctgggcgatcggagc
gacctctgcgtcgtcggcgacgccagccagaccatctactccttcgcgggggcccgcgcc
gactacctcctcgacttcccggcccgctggccggcggccacggtggtgcgcctggaggag
aactaccgctccgccctgccgatcgtgcagaccgcgaaccggttgatgcgcggacggccc
ggcgcgctctccctgcacgcggtgacggctggcgaggcgcccgagccggcgatcgacgcc
tacccggacgacatcgcggaggcgcgcggcatcgcggcgcgggtcgcgggcgatatcgag
gcgggggtgcgtgcctccgacatcgcggtgctctttcgcaccaacagccagtccgccgtc
atcgagcacgccctgcacgagcgtggcgtgagcgcgcatatgcgcggtggcaagcgcttc
ttcgacctgccggaggtgaagcaggccgtgatgcagctgcgcgccgcctccgtctcgatc
agcggtgagccgctgttcaagtcggtgagcgacgtcctccgctcgctcggttggagcgct
gagccgcccgccgctcccggggcggtgcgcgatcggtgggagtcgctggacacgctggcc
cgcctcgtcgatgaggcccccgcggacgggagctttcgccacttcactgacgacctgatc
gcccgccagcagatgcaccacgagcccgaccgggcagcggtcacgctcgcgacactgcac
tccgctaagggcctggagtgggagtcggtgcatctgatggggctcgcggagggtctgctg
cccatctcgtacgccgccgggctcgaggcgattgatgaggagcgccgcctcctctacgtc
ggggtcacccgcgcccgccgacgtctgcgcctctcctggtcgcgctcgagcatcggccgt
gtcactcggagggagccgtcgcgtttcctcgaagagctcggcacgcgcactcggggtgcg
gctcccgctcccgcagggtga
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