Rathayibacter rathayi: C1O28_03845
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Entry
C1O28_03845 CDS
T05845
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rry
Rathayibacter rathayi
Pathway
rry03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rry00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C1O28_03845
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rry03019
]
C1O28_03845
03400 DNA repair and recombination proteins [BR:
rry03400
]
C1O28_03845
Enzymes [BR:
rry01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C1O28_03845
Messenger RNA biogenesis [BR:
rry03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C1O28_03845
DNA repair and recombination proteins [BR:
rry03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
C1O28_03845
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
MarR_2
DUF3553
PcrA_UvrD_tudor
Cas3-like_C_2
ResIII
TrmB
HTH_24
Rrf2
HTH_36
Motif
Other DBs
NCBI-ProteinID:
AZZ48439
UniProt:
A0ABD6WC04
LinkDB
All DBs
Position
768852..770486
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AA seq
544 aa
AA seq
DB search
MNSSRIDSVSRIAREDFGWSSLLPGQREAIESAASGQDTLLVLATGGGKSAVYQIAGAER
GGVVLVVSPLVALQADQLAAIEAAPAAPPAVAINSAQGAAAVARAWKRIDEGGPLYVLLA
PEQLAKPENVARLAAAGVSLLVVDEAHCLSSWGHDFRPDYLRLADVRGQLGDPPVLAMTA
TASGPVREEIIERLRMTDPEVQVHGVDRPEIRLVVHRHESENEKRAAVVEEARSWMAPGL
VYVATRKETETYAADIAAEGRRVAAYHAGLKVSERKVVHEQWRAGELDVVVATSAFGMGI
DRADVRFVLHATTTESLDAYYQEIGRAGRDGEPATGALHYRAEDLGLRRFFAKRSVDKAA
LRVVWAAVSEQPGLDSAALAKELGKPARTIVRIVNDLADAGLVETGSGLRATKEVSGDEA
VDAVTAALASRERIAESRLAMMRAYAETTQCRRRVLLDYFGVESPEWCGNCDGCERHEAD
VETVESPVDAPLSVDEAVEHREWGAGTVMSVEADRATIFFESEGYKVLSFQALESGVLRE
HAPA
NT seq
1635 nt
NT seq
+upstream
nt +downstream
nt
atgaactcctcccgcatcgactccgtcagccgcatcgcccgggaggacttcggctggtcg
tcgctgctccccggtcagcgcgaggcgatcgagtcggcggcctctggccaggacaccctg
ctggtgctcgcgacgggcggcggcaagtccgcggtgtaccagattgccggagccgagcgc
ggcggggtggtcctcgtcgtctcgccgctcgtggcgctccaggccgaccagctcgccgcg
atcgaggcggcgcccgctgctccgcccgctgtcgcgatcaactccgcccagggcgccgcg
gccgtggcccgcgcctggaagcggatcgacgagggcgggccgctctacgtcctcctcgct
ccggagcagctggccaagcccgagaacgttgcccgtctggcggccgcgggagtctcgctc
ctggtggtggacgaggcgcactgcctctcctcctggggccacgatttccggcccgactac
ctccgcctggccgacgtgcgcggccagctcggcgacccgccggtgctggcgatgaccgcc
acggcctccgggccggtgcgcgaggaaattatcgagcggctgcggatgaccgaccccgag
gtgcaggtgcacggcgtcgaccgtcccgagatccgcctggtcgtgcaccgccacgagagt
gagaacgagaagcgcgcggccgtggtggaggaggcgcgcagctggatggctccgggcctg
gtctacgtggccacgcgcaaggagaccgagacgtacgcagcggatatcgcagcggagggg
cgccgggttgcggcataccacgcggggctcaaggtgtcggagcgcaaggtcgtgcacgag
cagtggcgggccggcgagctggacgtggtcgtcgcaacctcggccttcgggatgggcatc
gaccgcgccgacgtgcgcttcgttctgcacgcgacgacgaccgagtcactcgacgcctac
taccaggagatcggccgggccggccgcgatggcgaacctgcgaccggcgcactgcactac
cgcgccgaggacctggggctgcgacgcttcttcgccaagcgctccgtcgacaaggccgcg
ctgcgggtggtctgggcggccgtctcggagcagccggggctcgactccgcggcgctcgcg
aaggagctgggcaagccggcgcgcacgatcgtgcggatcgtgaacgatctcgcggacgcg
ggactggtggagaccggatccgggctgcgggcgacgaaggaggtgtccggcgacgaggcc
gtggacgcggtgacagccgctctggcctcgcgcgagcggatcgcggagtcgcgactggcg
atgatgcgggcctacgccgagacgactcagtgtcgacgccgggtgctgctggactacttc
ggcgtggagtcgccggagtggtgcggcaactgcgacggctgcgagcggcacgaggccgac
gtcgagaccgtcgagtcgcccgtggatgctccgctcagcgtcgacgaggccgtcgagcac
cgcgagtggggcgccggcaccgtgatgagcgtcgaggccgaccgcgcgacgatcttcttc
gagtccgagggttataaagtgctctccttccaggccctcgagtccggagtcctccgcgag
cacgcccctgcctaa
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