Rathayibacter rathayi: C1O28_04930
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Entry
C1O28_04930 CDS
T05845
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rry
Rathayibacter rathayi
Pathway
rry03030
DNA replication
rry03430
Mismatch repair
rry03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rry00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
C1O28_04930
03430 Mismatch repair
C1O28_04930
03440 Homologous recombination
C1O28_04930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rry03032
]
C1O28_04930
03400 DNA repair and recombination proteins [BR:
rry03400
]
C1O28_04930
Enzymes [BR:
rry01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
C1O28_04930
DNA replication proteins [BR:
rry03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
C1O28_04930
DNA repair and recombination proteins [BR:
rry03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
C1O28_04930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
tRNA_anti_2
HROB
MCM10_OB
Motif
Other DBs
NCBI-ProteinID:
AZZ48616
UniProt:
A0ABD6W916
LinkDB
All DBs
Position
1000272..1003784
Genome browser
AA seq
1170 aa
AA seq
DB search
MPSNDSFVHLHVHSEYSMLDGAARVTPLIDAAVEEGMPAIAVTDHGNVFGAFDFWRTATA
AGIKPIIGTEAYLTPGTHRSDKTRIRWGDGGGDDVSGSGSYTHMTLLSSTTTGMHNLFRL
SSRASIEGYYFKPRMDREILSQYSEGLIGTTGCPSGEVQTRLRLGQYREACQAAADYRDI
FGKENFFAEIMDHGLDIERRVIGDVIRLAKDLDLPLVATNDLHYTHAHDATSHAALLCVQ
SGTTLDDPKRFKLDADEFYLKSPREMRQVFRDHPEACDNTLLIAERCDVQFDTSANYMPR
FPVPEGETEDTWFVKEIEAGLHERYPDGISEEVRARADYETQVILQMGFPGYFLVVADFI
NWSKRNGIRVGPGRGSGAGSMAAYAMKITDLDPLRHGLIFERFLNPDRVSMPDFDVDFDD
RRRGEVIRYVTEKYGDERVAQIVTYGTIKAKQALKDASRVLGFPFGMGEKLTKAMPPAIM
GKDIPLSGINDPAHARYKEALDVRNVIAEDPQAKLVFDTALGLENLKRQWGVHAAGVIMS
SDPLLDIIPIMKREQDGQIVTQFDYPACESLGLIKMDFLGLRNLTIIDDALDNIRANRGQ
DLVLEDLELDDPAAYELLARGDTLGVFQLDGGPMRGLLRLMKPDNFEDISAVLALYRPGP
MGADSHTNYALRKNGVQQITPIHPELEEPLAEVLGGTYGLIVYQEQVMSIAQKLAGFTLA
QADLLRRAMGKKKKSELDKQFEGFSGGMIANGYSMEAVKTLWDILLPFSDYAFNKAHSAA
YGVVSYWTAYLKAHYPAEYMAALLTSVGDSKDKMAAYLNECRRMGIKVLPPDVNESIGFF
TAVGTDIRFGLGAVRNVGTNVVEGIRAAREEKGRFETFHDFLRKVPLQVTNKRTIESLVK
AGAFDSLGSTRRALVEVHEDAVEAAVGEKRNEANGQVGFDFDSLWDEPQAAIQVPERPEW
AKRDKLAFERDMLGLYVSDHPLAGLETELAKHYSTTIADLLISETIADGETVVVAGLVTS
VQHRMAKASGNQYGMIQVEDFGGEITCMFMGKAYQEFAPALTNDSIVVVRGRVSMRDDGM
NLHAFSLFAPEMSQDGDSGPLTVSMPEPRATTDTISQLSDVLIRHSGQTEVRLKLIKGDT
ARVFEVPFPVRITPDLFGELKSLLGPNCLY
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
ttgccgagtaacgattccttcgtccacctgcatgtgcacagcgagtactcgatgctcgac
ggtgccgcgcgggtcacgccgctgatcgacgcggcggtcgaggagggcatgccggcgatc
gcggtgaccgaccacgggaacgtgttcggggccttcgacttctggcgcaccgcgacggcg
gcggggatcaagccgatcatcggcaccgaggcctacctcactccgggtacacaccgctcc
gacaagacgcggatccgctggggcgacggtggcggcgacgacgtgtccggctccggctcc
tacacgcacatgacgctgctcagctcgaccacgacgggcatgcacaacctctttcgcctc
tcctcgcgcgcgtcgatcgagggctactacttcaagccacggatggatcgcgagatcctc
tcccagtattccgagggcctgatcggcacgaccggctgcccgagcggtgaggtgcagacc
cgcctgcgcctgggccagtaccgggaggcgtgccaagcggccgccgactaccgcgacatc
ttcggcaaagagaacttcttcgccgagatcatggaccacggtctcgacatcgagcggcgg
gtcatcggcgacgtcatccggctcgccaaggacctggacctcccgctcgtggccaccaac
gacctgcactacacccacgcgcacgacgcgacctcgcacgccgcgctgctctgcgtgcag
tccggtacgacgctcgatgatcccaagcgcttcaagttagacgccgatgagttctacctc
aagtcgccgcgcgagatgcgccaggtctttcgcgaccaccccgaggcctgcgataacacg
ctcctcatcgccgagcgctgcgacgtgcagttcgacacgtccgccaactacatgccccgt
ttccccgtccccgagggtgagaccgaggacacctggttcgtcaaggagatcgaggccgga
ctgcacgagcgctacccggacggcatctcggaggaggtgcgtgctcgcgccgactacgag
acgcaggtcatcctgcagatgggcttccccggctacttcctcgtcgtcgccgatttcatc
aactggtccaagcgcaacgggatccgcgtcggcccgggccgcggttcaggcgcaggctcg
atggccgcctacgcgatgaaaatcaccgacctcgatccgctgcgccacggcctgatcttc
gagcggttcctcaacccggaccgggtctcgatgcccgacttcgacgtcgacttcgacgac
cgtcgccgcggtgaggtcatccgctacgtgaccgagaagtacggtgacgagcgcgtcgcc
cagatcgtcacctacggcaccatcaaggcgaagcaggcgctcaaggacgcctcccgtgtc
ctcggcttcccgttcgggatgggcgagaagctgaccaaggcgatgccgcccgcgatcatg
gggaaggacatcccgctcagcggcatcaacgacccggctcacgctcgctacaaggaagcg
ctcgacgttcggaacgtgatcgctgaggatccgcaggccaagctcgtcttcgacaccgcg
ctcggactcgagaacctcaaacgccagtggggcgtgcacgcggccggcgttatcatgtcc
agcgacccgctgctcgacatcattccgatcatgaagcgggagcaggacggccagatcgtc
acgcagttcgactaccccgcgtgcgagtccctcggcctgatcaagatggacttcctgggg
ctgcggaacctcacgatcatcgacgacgccctcgacaacattcgggcgaaccgcggccag
gacctcgtactcgaggacctcgaactcgacgacccggcggcctacgagttgctggctcgc
ggagacaccctcggcgtgttccagctcgacggcggaccgatgcgcggcctgctccgcctg
atgaagccggacaacttcgaggacatttccgcggtcctcgcgctctaccggccgggcccg
atgggtgccgactcccacaccaactacgcgctgcgcaagaacggcgtgcagcagatcacc
ccgatccatcccgaactcgaggagccgctcgcggaggtgctcggcggaacgtacggcctg
atcgtgtaccaggagcaggtcatgtcgatcgcgcaaaagcttgccggcttcacgctggcg
caagccgacctgctgcggcgcgcgatgggcaagaagaagaagtccgaactcgacaaacag
ttcgagggattctccggcggcatgatcgccaacggctactcgatggaggcggtcaagacc
ctctgggacatcttgctgcccttctccgactacgccttcaacaaggcgcattcggcggcg
tacggagtggtgtcctactggaccgcttacctcaaggcgcactaccccgcggagtacatg
gccgcgctgctcaccagcgtcggcgactcgaaggacaagatggcggcctacctcaacgag
tgtcggcggatgggcatcaaggtgctcccgcccgacgtcaacgagtcgatcggcttcttc
accgcggtcggcaccgacatccgtttcggtctcggcgccgtccgcaacgtggggacgaac
gtggtcgaggggatccgcgccgcgcgtgaggagaagggtcgcttcgagaccttccacgac
ttcctccgcaaggtgccgttacaggtgacgaacaagcgcacgattgagtcgctggtcaaa
gccggcgccttcgactcgctcggctcgacccgccgcgccctcgtcgaggtgcacgaggac
gccgtcgaggctgccgtcggggagaagcgcaacgaggccaatggccaggtcggcttcgac
ttcgacagcctctgggacgagccgcaggccgcgatccaggtccccgagcgtccggagtgg
gccaaacgggacaagctcgccttcgagcgcgacatgctcgggctctacgtgtccgaccat
cccctcgccggcctcgagaccgaactcgccaagcactacagcacgaccatcgccgacctg
ctgatctcggagacgatcgccgacggagagacggtggtcgtcgccggcctcgtcacgagc
gtccagcaccggatggccaaggcctccggcaaccagtacgggatgatccaggtcgaggac
ttcggcggcgagattacgtgcatgttcatgggcaaggcctaccaggagttcgcccccgcc
ctgacgaacgattccatcgtggtcgtccgcggccgggtcagcatgcgcgacgacgggatg
aacctgcacgcgttcagcctcttcgcccccgaaatgagtcaggacggcgactccggaccg
ctcaccgtctcgatgccggagccgcgcgcgaccaccgatacgatctcgcagctcagcgac
gtgctcatccgccactcggggcagaccgaggtacgcctgaagctcatcaagggcgacacg
gcgcgcgtcttcgaggtcccgttcccggtgcggatcacaccggacctgttcggggagctg
aagagcctgctggggccaaactgtttgtattga
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