Rathayibacter rathayi: C1O28_05550
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Entry
C1O28_05550 CDS
T05845
Name
(GenBank) excinuclease ABC subunit UvrA
KO
K03701
excinuclease ABC subunit A
Organism
rry
Rathayibacter rathayi
Pathway
rry03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rry00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C1O28_05550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rry03400
]
C1O28_05550
DNA repair and recombination proteins [BR:
rry03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
C1O28_05550
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
C1O28_05550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
AAA_29
RsgA_GTPase
AAA_16
AAA_21
nSTAND1
AAA_25
APS_kinase
AAA_22
nSTAND3
DnaJ_CXXCXGXG
NACHT
ATPase
SLFN-g3_helicase
MeaB
Viral_helicase1
NTPase_1
DUF87
Motif
Other DBs
NCBI-ProteinID:
AZZ50424
LinkDB
All DBs
Position
1142807..1145719
Genome browser
AA seq
970 aa
AA seq
DB search
MNAVTDPSSTPSPSFHRFVSSLDETTSKLVVSGARVHNLQNVDLEIPRDSMVVFTGLSGS
GKSSLAFDTIFAEGQRRYVESLSAYARQFLGQVDRPDVDFIEGLSPAVSIDQKSTNRNPR
STVGTITEIFDYMRLLWARIGIPHCPICSERISAQTVQQIADQLMELESGTRYQILSPVV
SQKKGEFVDLFRELTAGGYSRAMVDGTLIQLSEPPVLKKQYKHDISVVVDRLVAGPDILG
RLTDSLETALRLTDGIVQINFVDGEGEGAWTTYSEKLSCPNNHPISLTEIEPRTFSFNAP
FGACPECSGLGTRMSVDDELLLGDPDLSIAEGVIIPWTTQGKGLFQYYEKLLDGLARDLG
FALTTPWKRLSTEVQQAVLHGDNFEVKVKWKNRYGREMSYTSGFEGVVPYIERQFVQAET
DVQRTRWAEFLREVPCPVCKGSRLKPEVLAVLVHGASIADVADLSLGDAQDFMSRLELTD
REAHIAAQVLREIRARIDFLIEVGLNYLNLSRAAASLSGGEAQRIRLATQIGSGLTGVLY
VLDEPSIGLHQRDNRRLIDTLIKLRDLGNTLIVVEHDEDTIRTADWIVDIGPGAGVNGGK
VVHSGSYESLLQNTHSLTGDYVSGRKAIEVPKKRRKIDRRRMIKVVGANANNLRKVDAEF
PLGTFVAVTGVSGSGKSTLVNDILYRVLANQLNGARKVPGKHTRVTGLENLDKVVHVDQN
PIGRTPRSNPATYTGVFDRIRTLFAETTEAKARGYLPGRFSFNVKGGRCEACSGDGTIKI
EMNFLPDVYVACEVCGGARYNRDTLTVHYKGKNIAEVLDMPIAEAADFFEPITAIHRFLR
TLVEVGLGYVRLGQSATTLSGGEAQRVKLATELQRRSNGRSVYVLDEPTTGLHFEDVRKL
LMVLNGLVDKGNTVITIEHNLDVIKSADWLIDMGPEGGAGGGQVVAVGTPEHVAKADGSH
TGLFLAEILG
NT seq
2913 nt
NT seq
+upstream
nt +downstream
nt
ctgaacgccgttacggacccctcctccaccccctctccctcctttcaccgcttcgtctcc
tcgctcgacgagacgacgtcgaagctggtggtgagcggcgcgcgggtgcacaacctgcag
aacgtcgacctcgagatcccgcgcgactcgatggtggtgttcaccggtctgtcgggctcc
ggtaagtcgtccctcgccttcgatacgatcttcgccgagggccagcggcgctacgtcgag
tcgctctccgcctatgctcgccagttcctcggacaggtggaccgaccggacgtcgacttc
atcgagggcctcagtcccgccgtctcgatcgaccaaaagtcgacgaaccgcaacccgcgc
tcgaccgtcggcacgatcaccgagatcttcgactacatgcgcctgctctgggcccgcatc
ggaatcccgcactgcccgatttgcagcgagcggatctcggcgcagaccgtccagcagata
gccgaccagctgatggagctcgagtccggaacccgctaccaaatcctcagccctgtcgtc
tcgcagaagaagggcgagttcgtcgaccttttcagggagctgactgcgggtgggtattcg
cgtgcgatggtcgacgggacgctcatccagctgagcgagccgcccgtgctcaagaagcag
tacaagcacgacatctcggtcgtcgtcgaccggctggtcgccggccccgacatcctcgga
cgcctgaccgactcgctcgagacggctctgcggctcaccgacggcattgtgcagatcaac
ttcgtcgacggagagggcgagggtgcctggaccacctactccgaaaagctgtcctgcccg
aacaaccacccgatctcgctcaccgagatcgagccgcgcaccttttccttcaacgcgccg
ttcggagcctgccccgagtgctcgggcctcggcacgcgaatgtcggtcgatgacgaactg
cttcttggcgaccccgatctcagcatcgccgagggcgtcatcattccctggaccactcag
ggcaagggcctgttccagtattacgagaagctgctcgacggtctggcgcgcgacctcggc
ttcgcactgaccaccccgtggaagcgcctcagtaccgaggtgcagcaggcggtcctccac
ggcgacaacttcgaggtcaaggtcaagtggaagaatcgctacggccgcgagatgagctac
acctccggcttcgagggcgtcgtgccctacatcgagcgtcaattcgtccaggccgagacg
gacgtgcagcgcacccgctgggcggagttccttcgagaggtgccctgccccgtgtgcaag
gggtcgcgcctcaagccagaggtgctcgccgtgctcgtgcacggcgcgagtatcgccgat
gtggcagacctcagcctgggcgacgcccaggacttcatgagccggctcgagctcaccgac
cgagaggcgcacatcgccgcgcaggtgctccgcgagatccgggcccgcatcgacttcctc
atcgaggtcgggttgaactacctcaacctctcgcgcgccgccgcctccctgtccggcggc
gaggcgcagcggatccgcctggcgacccagatcggctccgggctcaccggcgtactctac
gtgctcgacgagccgagcatcggtctgcaccagcgcgacaaccgccgcctgatcgacacg
ctcatcaagctgcgcgacctcggcaacacgctgatcgtcgtcgagcacgacgaggatacg
atccgtaccgccgactggatcgtcgacatcggcccgggtgccggggtcaacggcggcaag
gtcgtgcactccggctcctacgagtccctactccagaacacccactcgctgaccggcgac
tacgtgtccggccgcaaggcgatcgaggtcccgaagaagcgccgcaagatcgaccgcagg
cggatgatcaaggtcgtcggcgcgaacgccaacaatctgcgcaaggtcgatgcggagttc
ccgctcggcaccttcgtcgcggtcaccggagtctctggatcgggcaagagcaccctggtc
aacgacatcctgtaccgcgtgctcgccaaccagctcaatggggctcgaaaggttcccggc
aagcacacccgcgtcaccggcctcgaaaacctcgacaaggtcgtgcacgtcgaccagaac
ccgatcggccgcacgccgcgctcgaaccccgccacctacaccggtgtgttcgaccgcatc
cgcactctcttcgcagaaacgacggaggcgaaggctcgcggctacctgcccggccgattc
agcttcaacgtcaaaggcggacgctgcgaggcctgctcgggcgacggcaccatcaagatc
gagatgaacttcctgcccgacgtctacgtcgcgtgcgaggtctgcgggggagcgcgctac
aaccgcgacaccctgaccgtgcactacaagggcaagaacatcgccgaggtgctcgacatg
ccgatcgccgaggccgccgacttcttcgagccgatcaccgcgatccaccgcttcctccgg
acgctggtcgaggtgggccttggctacgtccgcctcggtcagagcgcgaccacgctctcc
ggcggcgaggcgcagcgcgtgaaactcgccaccgagctgcagcgccgctcgaacggccgc
agcgtctacgtgctcgacgagccgaccacgggtctgcacttcgaggatgtccgtaagctc
ctgatggtactcaacggtctggtcgacaagggcaacacagtcatcacgatcgagcacaat
ctcgacgtgatcaagtcggccgactggctaatcgacatgggccccgagggcggagcgggt
ggtggccaggtggtggccgtcggcacgcccgagcacgtcgcgaaggccgacggaagccac
acgggcctgttcctcgccgagatcctcggctga
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