KEGG   Rathayibacter rathayi: C1O28_06995
Entry
C1O28_06995       CDS       T05845                                 
Name
(GenBank) bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase
  KO
K10563  formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
rry  Rathayibacter rathayi
Pathway
rry03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:rry00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    C1O28_06995
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rry03400]
    C1O28_06995
Enzymes [BR:rry01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     C1O28_06995
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     C1O28_06995
DNA repair and recombination proteins [BR:rry03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     C1O28_06995
SSDB
Motif
Pfam: Fapy_DNA_glyco H2TH zf-FPG_IleRS NFACT_N Zn_Tnp_IS91
Other DBs
NCBI-ProteinID: AZZ50446
LinkDB
Position
complement(1447761..1448675)
AA seq 304 aa
MPELPEVEVVRAGLAPAVTGSLVTGVEIVDERSLKRHVHPHGSFERLLVGRRLEGAVRRG
KFLWLPAGRDEALLVHLGMSGQVLLRTADAALPRLARIRVGIEHPEHGELALHFVDQRIF
GSMAVDALVPTADGAPGGFAGEDVRVGDWLRAVPSQVAHIARDPLDASFDLDAIVAALAR
RTSGIKRALLDQTLVSGIGNIYADESLWAAELHPERPSSSLGEARIRRLFAEVRSVLERA
LAEGGTSFDAQYVNVNGASGYFSHSLLAYGQTGKPCARCGEAIVRVPFMNRSSHLCPQCQ
QVPR
NT seq 915 nt   +upstreamnt  +downstreamnt
gtgcccgagctgcccgaggtcgaggtggtgcgcgcgggcctcgcgccggcggtcaccgga
tcgctggtgaccggcgtcgagatcgtcgatgagcgctcgctgaagcgtcatgtgcatccg
cacggcagtttcgagcgcctgctggtcgggcgccggctcgagggggcggtgcggcgcggc
aagttcctctggctgcccgcgggccgcgatgaggcgctactggtgcatctcgggatgagc
ggccaggtgctgttgcgtacggcggatgcggcgctgccgcggctcgcgcgcatccgggtg
gggatcgagcaccccgagcacggcgaactcgccctgcacttcgtcgatcagcggatcttc
ggctcgatggctgtcgacgctctggtgccgaccgcggacggcgcgcccggcggcttcgcg
ggtgaggacgtgcgcgtcggagactggctgcgcgcggtgccctcgcaagtggcgcacatc
gcccgcgatccgctcgacgcctccttcgatctcgatgcgatcgtcgccgcactggcgcgg
cggaccagcgggatcaagcgggcgctgctcgatcagacgctggtgagcggcatcggcaac
atctatgcggacgagtcgctgtgggcggcggagctgcacccggagcgaccgagctcgtcg
ctgggcgaggcgcgcatccgccgactcttcgccgaggtccgctcggtgctggagcgcgct
ctggccgagggtggcaccagcttcgacgcgcagtacgtgaacgtgaacggtgcctccggc
tacttctcgcacagcctgctcgcgtacgggcagacggggaagccctgcgcccgctgcggc
gaggcgatcgtccgggtgccgttcatgaaccgctcctcgcacctctgcccgcagtgccaa
caggtgccgcgctga

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