Rathayibacter rathayi: C1O28_06995
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Entry
C1O28_06995 CDS
T05845
Name
(GenBank) bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
rry
Rathayibacter rathayi
Pathway
rry03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rry00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
C1O28_06995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rry03400
]
C1O28_06995
Enzymes [BR:
rry01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
C1O28_06995
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
C1O28_06995
DNA repair and recombination proteins [BR:
rry03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
C1O28_06995
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Zn_Tnp_IS91
Motif
Other DBs
NCBI-ProteinID:
AZZ50446
LinkDB
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Position
complement(1447761..1448675)
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AA seq
304 aa
AA seq
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MPELPEVEVVRAGLAPAVTGSLVTGVEIVDERSLKRHVHPHGSFERLLVGRRLEGAVRRG
KFLWLPAGRDEALLVHLGMSGQVLLRTADAALPRLARIRVGIEHPEHGELALHFVDQRIF
GSMAVDALVPTADGAPGGFAGEDVRVGDWLRAVPSQVAHIARDPLDASFDLDAIVAALAR
RTSGIKRALLDQTLVSGIGNIYADESLWAAELHPERPSSSLGEARIRRLFAEVRSVLERA
LAEGGTSFDAQYVNVNGASGYFSHSLLAYGQTGKPCARCGEAIVRVPFMNRSSHLCPQCQ
QVPR
NT seq
915 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgagctgcccgaggtcgaggtggtgcgcgcgggcctcgcgccggcggtcaccgga
tcgctggtgaccggcgtcgagatcgtcgatgagcgctcgctgaagcgtcatgtgcatccg
cacggcagtttcgagcgcctgctggtcgggcgccggctcgagggggcggtgcggcgcggc
aagttcctctggctgcccgcgggccgcgatgaggcgctactggtgcatctcgggatgagc
ggccaggtgctgttgcgtacggcggatgcggcgctgccgcggctcgcgcgcatccgggtg
gggatcgagcaccccgagcacggcgaactcgccctgcacttcgtcgatcagcggatcttc
ggctcgatggctgtcgacgctctggtgccgaccgcggacggcgcgcccggcggcttcgcg
ggtgaggacgtgcgcgtcggagactggctgcgcgcggtgccctcgcaagtggcgcacatc
gcccgcgatccgctcgacgcctccttcgatctcgatgcgatcgtcgccgcactggcgcgg
cggaccagcgggatcaagcgggcgctgctcgatcagacgctggtgagcggcatcggcaac
atctatgcggacgagtcgctgtgggcggcggagctgcacccggagcgaccgagctcgtcg
ctgggcgaggcgcgcatccgccgactcttcgccgaggtccgctcggtgctggagcgcgct
ctggccgagggtggcaccagcttcgacgcgcagtacgtgaacgtgaacggtgcctccggc
tacttctcgcacagcctgctcgcgtacgggcagacggggaagccctgcgcccgctgcggc
gaggcgatcgtccgggtgccgttcatgaaccgctcctcgcacctctgcccgcagtgccaa
caggtgccgcgctga
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