Rathayibacter rathayi: C1O28_11580
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Entry
C1O28_11580 CDS
T05845
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rry
Rathayibacter rathayi
Pathway
rry03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rry00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C1O28_11580 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rry03019
]
C1O28_11580 (recQ)
03400 DNA repair and recombination proteins [BR:
rry03400
]
C1O28_11580 (recQ)
Enzymes [BR:
rry01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C1O28_11580 (recQ)
Messenger RNA biogenesis [BR:
rry03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C1O28_11580 (recQ)
DNA repair and recombination proteins [BR:
rry03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
C1O28_11580 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
RecQ_Zn_bind
Helicase_C
Motif
Other DBs
NCBI-ProteinID:
AZZ49741
UniProt:
A0ABD6W6Q5
LinkDB
All DBs
Position
complement(2413592..2415994)
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AA seq
800 aa
AA seq
DB search
MPGPRTSASPVACVLNSSARPSPSSANRSAQASPACASGTATPARSPTSDPRHRWLAPEA
SSPPPFLHPLSTVPPAPGAASEPTGRVPRVTEPTATALPAPPLADPAAEYRSSDGSDAAS
GQASRGSAQAQAILEKVFGYARFRGEQQAIVEQVIGGGDAVVLMPTGGGKSLCYQIPAIV
RPGTGVVVSPLIALMQDQVDALRANGVRAEFLNSTQDAGERNRVERAYLDGTLDLLYVAP
ERLGNEGTKQFLARGRIALFAIDEAHCVSQWGHDFRPDYLALGELAERWPDVPRIALTAT
ATEATHREITSRLHLGAARHFVSSFDRPNIQYRIVTKVEPRKQLIDFLRREHAHDAGIVY
ALSRKSVEATAEALRSAGFDAVAYHAGLDSRVRAAAQSRFLREEGVIVCATIAFGMGIDK
PDVRFVAHIDLPKSVEGYYQETGRAGRDGLPSTAWLAYGLQDVVQQRRMIDESPGDLAHR
RRMSAHLDAMLALSETVQCRRVNLLAYFGQESTACGNCDTCLEPPASWDGTVAAQKFLST
VVRLKRERNQQFGAGHIIDVLRGKTTPRTTQHKHDALATWGIGADLSDTQWRGVARQLLA
QSLLGVNDDGFGTLVITPASASVLGGERKVELRQEPEKPARSSGSTRSGRSIVAELSGEA
QPLFERLREWRVAQARAQSVPAYIVFNDATLREIATAEPASMDELSIIGGVGQKKLLTYG
EAVLAVVAGETPEIAVPQAGEEAPAPRRAPAGRGGASRPGAAKPTFGRESAGPPVSAAQP
PKDDWVPPDEPDWEPGWDSY
NT seq
2403 nt
NT seq
+upstream
nt +downstream
nt
atgcctggaccccgcacatcagcatctcccgtcgcctgcgtgctgaacagctcggcgcgg
ccgtccccctcctcggcgaaccgttcagcgcaggcctcgccggcgtgcgcttctggaacg
gcgacacccgcacgctcaccgacctctgatccgcgccaccggtggctcgcgcccgaagcc
tcctccccacctcccttccttcatcccctctccacagttccgcccgctcccggggccgcg
tcggagccgacgggtagagttccccgggtgacagagcccaccgcgacagccctccccgcc
ccgccgctcgccgaccccgcggcggagtaccggagcagcgacgggagcgacgcagcgagc
ggccaggcgagccgcgggtcggcccaggcgcaggcgatcctcgagaaggtcttcggctac
gcgcgcttccgcggcgagcagcaggcgatcgtcgagcaggtcatcggaggcggtgacgcc
gtcgtcctgatgcccaccggcggcggcaagtcgctctgctaccagatccccgcgatcgtc
cgccccggcaccggcgtggtcgtgtctccgctcatcgcactgatgcaggaccaggtcgac
gccctccgcgcgaacggcgtccgcgccgagttccttaactccacgcaggacgcgggggag
cgcaaccgcgtcgagcgcgcctacctcgacggcacactcgacctgctctacgtcgccccc
gagcgcttgggcaacgagggcaccaagcagttcctcgcccgcggccggatcgccctcttc
gcgatcgacgaggcgcactgcgtcagccagtggggccacgacttccgccccgactacctc
gctctgggcgagctcgccgagcgctggcccgacgtcccccgcatcgccctcaccgccacc
gccaccgaggcgacccaccgcgagatcacctcgcgcctgcacctcggcgccgcccgacac
ttcgtctcgagcttcgaccgccccaacatccagtaccggatcgtcacgaaggtcgagccg
cgcaagcagctgatcgacttcctccgccgcgagcatgctcacgacgcgggcatcgtctac
gccctctcgcgcaagagcgtcgaggcgacggcggaggcgctgcgctcggcgggcttcgac
gcggtcgcctaccacgcgggcctcgactcccgggtgcgcgccgccgctcagtcgcggttc
ctccgcgaggagggcgtgatcgtctgcgccaccatcgccttcggcatggggatcgacaag
ccggatgtgcggttcgtcgcgcatatcgacctgcccaagtcggtcgagggctactaccag
gagacgggccgagcgggccgcgacggcctgccctccaccgcgtggctcgcctacggcctg
caagacgtggtgcagcagcgccgcatgatcgacgagtcgccgggagatctggcgcatcgc
cggcggatgtccgcgcatctcgatgcgatgctcgccctctccgagacggtccagtgccgc
cgggtgaacctgctcgcgtacttcggccaggagagcaccgcctgcggcaactgcgacacc
tgcctcgagccgcccgcctcctgggacggcaccgtcgcggcccaaaagttcctttcgacg
gtcgtccggctcaagcgcgagcgcaaccagcagttcggcgccggccacatcatcgacgtc
ctccgcggcaagaccacgccgcgcaccacgcagcacaagcacgacgccctcgccacctgg
ggcatcggcgccgacctgagcgacacccagtggcgcggagtcgcccgccagctcctcgcg
cagagcctgctcggcgtgaacgacgatggcttcggcaccctcgtgattacgcccgcgtcc
gcctccgttctcggcggcgagcgaaaggtcgagctgcggcaggagcccgagaagcctgcg
cgttccagcgggtccacccgctccggccgctccatcgtcgccgagctctcgggcgaggcc
cagcccctgttcgagcggctgcgggagtggcgggtcgcacaggcgcgcgcgcaatccgtc
cccgcctacatcgtctttaacgacgcaaccctccgcgagatcgcgacggccgagccggcc
tcgatggacgagctcagcatcatcggcggcgtcggccaaaagaagctgctcacctacggt
gaggccgtgctcgccgtcgtcgcgggcgagactcccgagatcgccgtcccccaggccggt
gaggaggctcccgctccccgccgcgctccggccggccgtggcggtgcctcacgccccgga
gccgcgaagcccacgttcggccgcgagtccgccggtccgccggtgtcggccgcgcagccg
ccgaaggacgactgggtgccaccggacgagcccgactgggagcccggctgggacagctac
tga
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