Rathayibacter rathayi: C1O28_11920
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Entry
C1O28_11920 CDS
T05845
Name
(GenBank) type IV secretion protein Rhs
Organism
rry
Rathayibacter rathayi
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Ortholog
Paralog
GFIT
Motif
Pfam:
RHS_repeat
TEN_YD-shell
DUF6531
UL145
Motif
Other DBs
NCBI-ProteinID:
AZZ49803
LinkDB
All DBs
Position
complement(2480590..2485662)
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AA seq
1690 aa
AA seq
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MLIPCSCSPGASHRRDVCSALEFRPGFSTLGKRDIRSERTSPATGERRVLAREWKREQES
RNLFEQVGAALFGEEDPPVGPAADPVSIPIEQGAVGARQTPAPGGGGMGGGTSSARPEDL
RVFADASSAANDELRERPGQLRGLLTDFADQCRWGSLDADSALALALGSAGVALSREDIT
ITAAQAYGAPPTSGYADDPVNTGTGNFLETEVDLGFPGGAGSLRWERTYNSLDERAGAFG
AGWSSVAQVRLRVEDDGATFVLPDGREVVFPRQGEGWDRAVGESRWLTRESGPEGDKLVV
SGNDGSRWLFTAGGQWLSASSGPGTRVDVEYDGDGALTRLVHERGRWVALEWSGGRIVVA
HASDGRRVEYEYDAERLVAAATPGGTRRYGWNADGLLESVTDAGGVVEVRNRYDAKRRVL
AQTSPFGRTTRYAYLPGRATVVSDADGSRSNTWISDARGRLVGILDPAGRRQSMSYDAAG
NLLSATGRDGTVTAHAYDARGRLVRTKTPSGADITRGYDEFDRVMTLIAEQGGVTSYEYA
TDVDRSPSVVIDPEGGRTQLTWDDGLLVEVTDPEGVSVRLGYDPFGDLISTTDADGNTAR
LLRDQAGRVVAAVSPSGARTEYRYTPAGLLASRRDPLGATWRYEYEAGGRLGAIVDPLGA
RTVMEHGEHGAVVRTIDPLGRAIAREFDDLGNVSAALLPDGNSWRFAYDALSRLTETTDP
AGHLWRREYDADGALSALIDPTGSRATVFTDPHTTAVSDGAASSRTRFDPLGRPIATEAQ
DGSTALTVYDRCGRPVELVDEEGGLTRLIRDAAGRVIEQVAPSGASTRFEYDRCGRLAAV
TDPAGASTTLEYDADGRQIRWTGPTGETGWSEYDAAGRLTARHTPGRGTARYRYDLLGRV
VWSRDCWHGTRRFRYDPAGQLVEAVNGVGGITRYDYDERGRNTVIIDPLGGITRRTFDAA
DHAVAATDPLGRSTTAGYDPAGRQLWQQDPDGHRLSWTYDPAGRETSLSADGRLLSETRR
DLPARQAVITDHTGPGAPLEHTLTWNRRDQLLRRTRDGQGLAWEYDAAGHRTAVTGPDGT
RTRYERDSTGRVTAIEHPRLGRASFEYDAAGHLIASTAGGIAQTWQHRDGFITEHSTGTA
AGTGTSLTRVTRDEDGRITRLDGPSGGVDYRYDNAQQLLETRTDAGTSTFGYDTGGRLTR
ETTPDGRTSTHNYDAAGQLLATTREDGTRIEYLYDGLGRRTRVTDSDGGQRSYAWSAAGW
LDAVTDETSTTTLHVDTLGELATINGAATWWDTASSAPALLTVGDTPILATPGGVTGIGD
TWTSAGWRADRATTAEDPWGTVGPDTGLPPGLDLPAGIGLTANGGLSIAGLEWLGHRTYD
PGTRGFLTVDPLEAVTGAGWSGNPYSYAGNDPLHAVDPTGLRPVSDADLRAYRDGNNGAF
AAAGDWWSNNGEYVAAGALVAIGVALMFTGVGTLAGMALAGAASGAFLAGGISVATQKAT
TGSVNWGQVGIDSAVGALGGGAEALAYRAGASALTAEVIANTADGSVSKAAQYLTSPGPH
TPTGLLGATTAGAAGGAATGAASGLGSATTRRLGTDIPTTRLDDPPSPPSAHASPAPHSS
RKANEASKPPSKPSKHAAIPSSEPRSRSSPEESEHASTSSPGHHPVSCTLLRQKMASALN
SRKTRVLRTP
NT seq
5073 nt
NT seq
+upstream
nt +downstream
nt
ttgctgatcccgtgctcgtgcagcccgggcgcgtcgcatcgccgcgacgtgtgctccgct
ctcgagttccgcccggggttctcgacgctcggcaagcgcgacatccgctcggaacggacg
agcccggccactggtgagcggcgggtgctggcgcgggagtggaagcgggagcaggagtcc
cggaacctgttcgagcaggtcggtgcggcgttgttcggcgaggaggatccgccggtgggg
cctgcggccgatccggtgtcgatcccgatcgagcagggggcggtgggggcgcgtcagact
ccggcgccgggtggcggcgggatgggtggggggacgtcgtctgcgcggccggaggatctg
cgggtgttcgcggatgcgtcgtcggcggcgaacgacgagctgcgggagcgtccgggacag
ctgcggggactgctgacggatttcgcggaccagtgccggtgggggtcgctggacgcggac
agtgcgctggccctcgcgctggggtcggcgggggtggcgctgtcgcgggaggacatcacg
atcactgctgcgcaggcgtatggggcgccgcccacgtccgggtacgcggatgatccggtg
aacacgggcacggggaacttcctcgagacggaggtggatctggggttccccggcggcgcg
ggctcgctgcggtgggagcggacctacaactccctcgatgagcgtgcgggggcgttcggt
gcgggctggtcttcggtggcgcaggtgcggttacgggtcgaggacgacggcgcgaccttc
gtgctcccggatgggcgggaggtggtgttccctcgccagggcgagggctgggaccgcgcc
gtgggcgagagccggtggctgacccgcgagagcggtccggagggcgacaagctggtggtg
tcggggaacgacggctcccggtggctgttcacggcgggtgggcagtggctgtcggcgagc
agcggcccggggacgcgggtggacgtcgagtacgacggtgacggcgcgctgacgcggttg
gtgcacgagcggggccggtgggtggctctggagtggtcgggcgggcggatcgtcgtcgcg
cacgcctccgacggccgccgggtggagtacgagtacgacgctgaacgcctggtcgcggca
gccaccccgggcgggacgcgccggtacgggtggaacgcggacggactgctggagtcggtg
acggacgcgggcggagtcgtcgaggtccgcaaccgctacgacgcgaagcggcgggtgctg
gcgcagacgtcgccgttcgggcgcaccacccggtacgcgtatctgcccggccgggcgacg
gtcgtctcggacgcggacggatcccggtcgaacacctggatttcggatgcccggggccgc
ctggtggggatcctcgatccggcggggcggcggcagtcgatgagctacgacgccgccggg
aacctgctctccgcgaccggccgcgacggaacggtcaccgcccacgcctacgacgcgcgc
ggccggctggtgcgcacgaagactccctccggcgcggacatcacccgcggttacgacgag
ttcgaccgggtgatgaccctcatcgccgagcagggcggggtcaccagctacgagtacgcg
accgacgtggaccgctccccgagcgtcgtgatcgacccggagggcggacgcacccagctg
acctgggacgacggcctgctggtcgaggtcaccgacccggagggggtgagcgtccgtctc
ggctacgacccgttcggggatctgatcagcacgaccgacgcggacgggaacaccgcgcgg
ctgctgcgcgaccaggcgggccgggtggtcgccgcggtgtccccctccggagcgcgcacc
gagtaccgctacaccccggcgggcctgctcgcctcccgccgcgacccgctgggcgcgacc
tggcgctacgaatacgaggcaggcggacgcctgggcgcgatcgtcgatccgctcggcgcg
cgcaccgtgatggagcacggcgaacacggcgccgtcgtccgcaccatcgaccccctcggc
cgcgcgatcgcccgggagttcgacgacctcgggaacgtctcggccgcgctgctgcccgac
ggcaactcctggcggttcgcgtacgatgcgctctcccgcctgaccgagaccaccgacccc
gccggccacctctggcgccgcgagtacgacgcggacggcgcgctcagcgccctgatcgac
ccgaccggctcccgcgccacggtgttcaccgacccgcacaccaccgccgtctccgacgga
gccgcctcctcgcgcacccgcttcgaccccctcggccggcccatcgcgaccgaggcgcag
gacggatccacggccctcaccgtctacgaccggtgcggacgccccgtggaactcgtcgac
gaggaaggcggcctcacccgcctgatccgcgacgccgcgggccgcgtgatcgagcaagtc
gctccttccggcgcgagcacccggttcgagtacgaccggtgcgggcgcctcgcggccgtc
accgaccccgccggcgcctcgaccacgctcgagtacgacgccgacgggcgccagatccgc
tggaccggacccaccggggagaccggctggagcgagtacgacgccgccggccgcctcacc
gcccggcacacccccggccgcggcaccgcccgctaccgctacgacctcctcggccgcgtc
gtgtggtcccgcgactgctggcacggcacccgccggttccgctacgaccccgccgggcaa
ctcgtcgaagccgtcaacggcgtcggcggcatcacccgctacgactacgacgagcgcggc
cgcaacaccgtcatcatcgaccccctcggcggcatcacccggcgcaccttcgacgccgcc
gaccacgccgtcgccgcgaccgaccccctcggccgcagcacgaccgcaggctacgacccc
gccggccgccaactctggcagcaggaccccgacgggcaccgcctctcctggacctacgac
cccgccggccgcgaaaccagcctcagcgccgacggacgcctgctctccgaaacccgccgc
gaccttcccgcccgccaagccgtcatcaccgaccacaccggccccggcgcacccctcgaa
cacaccctcacctggaaccgccgcgaccaactcctccgccgcacccgcgacggccaaggc
ctcgcctgggagtacgacgccgccggccaccgcaccgccgtcaccggccccgacggcacc
cgcacccgctacgaacgcgacagcaccggcagagtcaccgcgatcgaacacccccgcctg
ggccgcgcgagtttcgagtacgacgccgccggacacctgatcgcctcgaccgccggaggg
atcgctcagacctggcagcaccgcgacggcttcatcacggagcacagcaccgggacagca
gcgggcaccgggacgtcgctgacccgcgtgacccgcgacgaggacggccgcatcacccgc
ctcgacggacccagcggaggcgtcgactaccgctacgacaacgcccagcaactcctcgaa
acccgcaccgacgccggcacctccacgttcgggtacgacaccggcggacgcctcactcgc
gaaaccacccccgacggccgcaccagtacccacaactacgacgccgcaggccaactcctc
gccaccacccgcgaggacggcacccgcatcgaatacctctacgacggcctcggccgccgc
acccgcgtcaccgacagcgacggcggccagcgctcctacgcctggagcgccgcgggctgg
ctcgacgccgtcaccgacgaaacgtccaccacgaccctgcacgtcgacaccctcggcgaa
ctcgccaccatcaacggcgccgcgacgtggtgggacaccgcctcctccgcgcccgcacta
ctgaccgtgggcgacaccccgatcctcgccaccccgggaggcgtcaccggcatcggcgac
acctggaccagcgccgggtggcgagccgaccgcgcgacaaccgcggaggatccgtggggc
acggtcggacctgacacgggcctgccgcccggcctcgacctgcccgccgggatcggcctg
accgccaacggcggcctctccatcgcgggcttggaatggctcggacaccgcacctacgat
ccggggactcggggcttcctgaccgtggatccgctggaggcggtgaccggcgcaggctgg
tcagggaacccctactcctacgccgggaacgaccccctccacgccgtggacccgacgggg
ttgcggccggtgtcggacgcggacctgcgcgcgtatcgcgacgggaacaacggcgcgttc
gccgccgccggcgactggtggtccaacaacggggaatacgtcgccgcaggcgccctcgtc
gccatcggcgtcgccctgatgttcaccggagttggcaccctcgccgggatggccctcgcc
ggagccgcatccggagccttcctagccggcggcatctccgtcgccacccagaaagccacc
accggtagcgtcaactggggccaagtcggcatcgactccgccgtcggcgcgctcggcgga
ggcgccgaagccctcgcctaccgcgccggcgccagcgccctcacagccgaagtgatcgcc
aacaccgccgacggcagcgtctccaaagccgcccaatacctcaccagccccggcccccac
acccccaccggactcctcggcgccaccaccgcaggagccgcaggaggagccgccaccggc
gccgccagcggactcggcagcgccaccacccgccgcctcggcacagacatccccaccaca
cgcctcgacgatcccccctcacccccgtccgcccacgcctcaccggcgccgcactcgtcg
cgaaaggccaacgaggcgtccaagcctccatcgaagccctcgaagcacgcggcgataccc
tcgtcggaaccgagatcacgatcatcgccggaggagtcagaacacgcgtcgacatcctcg
cccggacaccatccggtgagctgtactttattgaggcaaaaaatggcctccgcgctaaac
tcacgaaaaaccagagtattgcgtaccccctga
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