Rathayibacter rathayi: C1O28_14465
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Entry
C1O28_14465 CDS
T05845
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rry
Rathayibacter rathayi
Pathway
rry03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rry00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C1O28_14465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rry03019
]
C1O28_14465
03009 Ribosome biogenesis [BR:
rry03009
]
C1O28_14465
Enzymes [BR:
rry01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C1O28_14465
Messenger RNA biogenesis [BR:
rry03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C1O28_14465
Ribosome biogenesis [BR:
rry03009
]
Prokaryotic type
rRNA helicases
C1O28_14465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
adh_short
HEM4
UvrA_inter
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AZZ50247
UniProt:
A0ABD6W5L7
LinkDB
All DBs
Position
3007259..3009082
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AA seq
607 aa
AA seq
DB search
MASTDTPASAPEADTAPTLTFSDLGLSDPVLKALKEVGYETPSAIQAATIPSLLSGRDVL
GVAQTGTGKTAAFALPILSRLDLAQKTPQALVLAPTRELALQVCEAFERYASGLRGVHVL
PVYGGQGYGTQLSALRRGVHVVVGTPGRIMDHLEKGTLDLSALKYLVLDEADEMLKMGFA
EDVETILADTPVEKQIALFSATMPAQIRRISGKYLKEPEEITVKNKTTTSVNTTQRYLMV
SYPQKVDALTRILEVENFEGMIVFVRTKSETETLAEKLRARGYTAAAISGDVQQAQRERT
VEQLKSGKLDILVATDVAARGLDVERISHVVNYDIPIDTESYVHRIGRTGRAGRSGAAIS
FVTPRERRLLSAIEKATRQPLTEMRMPSVEDVNVTRLSRFDDAITAALADTERLQRFRDI
IGHYVEHHDVVESDVAAALAIVAQGEEPLLLSPDDPRFARREREDRDSRPDRGDRPDRGD
RFDRGGDRGERPERRQRPANSTLVSYRIEVGRRQRVEPRQIVGALANEGGLNRGDFGHID
IRPDFSIVELPADLPQEVLDRLADTRISGQLIELKPDRRPSRAGADRGGRPAGPSRTTER
PERKPRY
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccactgatacccccgcttccgcccccgaggccgacaccgcccccacgctcacc
ttctccgacctcggtctcagcgacccggtcctcaaggccctcaaggaggtcggctacgag
acgccctcggctatccaggccgcgacgatcccgtccctcctctccggccgtgacgtcctc
ggcgtcgcgcagaccggcaccggcaagaccgcggcgttcgcgctgccgatcctctcgcgc
ctcgacctcgcgcagaagacaccgcaggcgctcgtgctggctccgacccgcgagctcgcg
ctccaggtctgcgaggcgttcgagcgctacgcgtcaggtctgcgcggcgtccacgtcctc
cccgtctacgggggccagggctacggcacccagctctccgcgctgcgccgcggcgtccac
gtcgtcgtcggcacgcccggccgcatcatggaccacctcgagaagggcaccctcgacctt
tcggcgctgaagtacctggtgctcgacgaggccgacgagatgctcaagatgggcttcgcg
gaggacgtcgagacgatcctcgcggacacccccgtggagaagcagatcgcgctgttctcg
gcgacgatgcccgcgcagatccgccgtatctccggtaagtacctgaaggagccggaggag
atcacggtcaagaacaagaccacgacctccgtcaacaccacccagcgctacctgatggtg
tcgtacccgcagaaggtcgacgccctcacccgcatcctcgaggtcgagaacttcgagggc
atgatcgtgttcgtccgcacgaagagcgagacggagacgctggccgagaagctgcgcgcc
cgcggctacactgcggcggcgatcagcggagacgtgcagcaggcccagcgcgagcgcacc
gtcgagcagctgaagtcgggcaagctcgacatcctggtcgccaccgacgtcgccgcccgc
ggactcgacgtcgagcggatcagccatgtcgtcaactacgacatcccgatcgacaccgag
tcgtacgtgcaccgcatcggccgcaccggtcgcgcggggcgcagcggagcggcgatcagc
ttcgtcaccccgcgcgagcgccgcctcctctcggcgatcgagaaggccactcgccagccg
ctgaccgagatgcggatgccgagcgtcgaggacgtcaacgtcacgcgcctctcccgtttc
gacgacgcgatcaccgcggccctggccgataccgagcgcctgcagcgtttccgcgacatc
atcggccactacgtcgagcaccacgatgtcgtcgagtcggacgtcgccgccgcgctggcg
atcgtcgcccagggcgaagaaccgctgctgctgtcgccggacgacccgcgcttcgcccgg
cgcgagcgcgaggaccgcgactcccggcccgatcgcggcgaccggcccgaccgcggcgac
cgcttcgaccgcggcggtgaccgaggcgagcgccccgagcgccggcagcgcccggccaac
agcaccctcgtctcctaccggatcgaggtgggccgacgccagcgcgtcgagccccgccag
atcgtgggggcgctcgcgaacgagggtggcctcaatcgcggtgacttcggccacatcgac
attcgcccggacttctcgatcgtcgagctgcccgccgacctgccgcaggaggtgctcgat
cgcctcgctgacacccgcatcagcggccagctgatcgagctcaagccggaccgccgtccg
agccgcgccggcgctgaccgcggcggacgccccgccggccccagccgcaccacggagcgc
ccggagcgcaagccgcgctactga
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