Rhodococcus ruber: CS378_01005
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Entry
CS378_01005 CDS
T05142
Name
(GenBank) bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
rrz
Rhodococcus ruber
Pathway
rrz03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rrz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CS378_01005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rrz03400
]
CS378_01005
Enzymes [BR:
rrz01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
CS378_01005
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
CS378_01005
DNA repair and recombination proteins [BR:
rrz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
CS378_01005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
TackOD1
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
ATQ27438
UniProt:
A0A098BLP7
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All DBs
Position
219991..220860
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AA seq
289 aa
AA seq
DB search
MPELPEVEVVRRGLDAHVRGATIESVQVLHPRAVRRHEPGPRDLALRLTGQAVAAVQRRG
KYLWLVLEPADVALVVHLGMSGQMLVQPPAVPDEKHLRIRAVLDNGTDLRFVDQRTFGGW
ALAPLVEVDGAVLPEPVAHIARDPLDPAFDAAAVVKVLRGKHSEIKRLLLDQTVVSGIGN
IYADESLWRAGVHGNRAADRLGGPTLRRLLDAARDVMGEALAKGGTSFDALYVNVNGESG
YFDRSLNVYGQENLPCPRCGTPVRREKFMNRSSFSCPTCQPPPRSARRV
NT seq
870 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgaactgcccgaggtcgaggtcgtccgccgcggcctggacgcgcacgtccggggc
gccaccatcgagtccgtccaggtgctgcatccgcgtgcggtgcgccggcacgaacccggt
ccgcgggatctcgcgttgcggctgaccgggcaggccgtcgccgcggtccagcgtcgcggc
aagtacctgtggctcgtcctcgagcccgccgacgtcgcgctggtcgtgcatctcgggatg
agcggacagatgctggtccagccgcctgcggtgccggacgagaaacacctgcgcatccgt
gccgttctcgacaacggcaccgatctgcggttcgtggatcagcgcaccttcggcggctgg
gccctcgccccgctcgtcgaggtcgacggtgccgtcctgccggaacccgtcgcgcacatc
gcccgcgaccccctggaccccgcgttcgacgcggccgccgtggtgaaggtgctgcgcggc
aagcactccgagatcaagcgcctcctcctcgaccagaccgtcgtgtcgggcatcggcaac
atctacgccgacgaatcgctgtggcgggccggcgtgcacggcaaccgtgccgccgaccgg
ctcgggggaccgaccctgcgccggctcctcgacgcggcccgcgacgtgatgggcgaggca
ctcgcgaagggtggcacctcgttcgatgccctctacgtcaacgtcaacggcgagtccgga
tacttcgatcggtcgctgaacgtctacggccaggagaacctgccgtgcccacggtgcggt
acgccggtccggcgcgagaagttcatgaaccgctcgtcgttcagttgcccgacctgtcag
ccgccgccccggagcgcgcggcgagtctga
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