Rhodococcus ruber: CS378_02080
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Entry
CS378_02080 CDS
T05142
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
rrz
Rhodococcus ruber
Brite
KEGG Orthology (KO) [BR:
rrz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rrz03016
]
CS378_02080
Enzymes [BR:
rrz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
CS378_02080
Transfer RNA biogenesis [BR:
rrz03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
CS378_02080
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
DUF2866
Motif
Other DBs
NCBI-ProteinID:
ATQ27639
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All DBs
Position
complement(456015..457253)
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AA seq
412 aa
AA seq
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MSVANEHEPARAAVPLLTPRDGVPEVVTTAAGVAAAAEALAAGRGPLAVDAERASGFRYS
ARAYLVQLRRAGAGTVLLDPIPTAGALAPLASAINDLEWVLHSADQDLPGLDELGLRPAV
LYDTELAGRLAGFDRVGLAAIVERTLGFELRKGHGAADWSTRPLPDAWLNYAALDVEILV
ELRDAMADELERQGKSEWAAQEFEHIRRAGPPAPKPDRWRRTSRIHTLKDSRRLAIVREL
WTARDELAARRDIAPGRVLPDSAIVAAAEAAPRTVEELRALPVFGGPRQRRSSRIWLGAI
ERARALPKSDLPPVTQPFTGPPPANRWARHDPEAAARLTAARSALAELSEQVQVPVENLV
GPEMVRRLCWEWQVPADADVVAYIEERFAADGARPWQRELTVPRLAKALSAD
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
atgtcggtagccaacgagcacgagcccgcgcgggcagcggtcccgttgctgaccccgcgg
gacggggtccccgaggtcgtcaccacggctgccggagtggccgcggccgcggaagcactc
gccgcgggccggggaccactcgccgtcgacgcggaacgcgcctcgggtttccggtactcc
gcgcgggcctacctggtgcaactgcgacgggccggcgccggcacggtactgctcgacccg
atcccgacggccggggcgctcgccccgctcgcctcggcgatcaacgatctcgagtgggtg
ctgcactccgccgaccaggacctgcccggcctcgacgagctggggctgcgacctgcggtg
ctctacgacaccgagctggccggacggctggccggcttcgatcgagtggggctggccgcc
atcgtcgaacgcaccctcggtttcgaactgcgcaaggggcacggggctgcggactggtcc
acccggccgcttcccgacgcctggctgaactacgcggcactcgatgtcgagatcctcgtc
gagctccgggacgcgatggcggacgagctcgagcggcagggcaagtcggagtgggccgcg
caggagttcgagcacatccgtcgcgccgggccccccgcccccaaacccgaccgctggcgc
cgcacctcccggatccacaccctcaaggattcgcggcggctcgcgatcgtgcgcgagttg
tggactgcgcgagacgaactcgcggcgcggcgcgatatcgcacccggacgggtactgccg
gactcggcgatcgtcgccgccgcggaggccgcgccccgcacggtcgaggaactgcgcgcc
ctgccggtgttcggaggcccccgtcagcgccggtcgtcgcggatatggctgggcgcgatc
gagcgggcccgggcactgccgaaatcggacctgccccccgtcacgcagccgttcaccggc
ccgccgccggccaaccgctgggcccggcacgaccccgaagccgcggcgcggctcaccgcg
gcccggtccgcgctcgccgagctgagcgagcaggtgcaggtgccggtggagaatctggtc
ggccccgaaatggtgcgccggctgtgctgggagtggcaggtgccggcggatgcggacgtg
gtcgcgtacatcgaggaacggttcgccgccgacggggcacggccctggcagcgggaactg
acggtgccgcggctggcgaaggcgctgtccgcggactga
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