Rhodococcus ruber: CS378_04885
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Entry
CS378_04885 CDS
T05142
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rrz
Rhodococcus ruber
Pathway
rrz03030
DNA replication
rrz03430
Mismatch repair
rrz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rrz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CS378_04885
03430 Mismatch repair
CS378_04885
03440 Homologous recombination
CS378_04885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rrz03032
]
CS378_04885
03400 DNA repair and recombination proteins [BR:
rrz03400
]
CS378_04885
Enzymes [BR:
rrz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CS378_04885
DNA replication proteins [BR:
rrz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CS378_04885
DNA repair and recombination proteins [BR:
rrz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CS378_04885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HHH_3
DNA_pol_IIIA_C
Motif
Other DBs
NCBI-ProteinID:
ATQ31791
UniProt:
A0A098BP51
LinkDB
All DBs
Position
complement(1101669..1105205)
Genome browser
AA seq
1178 aa
AA seq
DB search
MADSFVHLHNHTEYSMLDGAAKVGPLFKEAERLGMTAVGMTDHGNMYGASEFYNVAEKQG
IKPIIGIEAYIAPESRFSTKRVQWGDPSQKSDDVSGSGSYTHMTMVAENATGLRNLFKLS
SLASIEGQLGKWARMDEDLIAHHAEGIIATTGCPSGEIQTRLRLGHEREALEAAAKWQEI
WGKDNFFLELMDHGLSIERRVREGLLDIGRKLDIPPLATNDCHYVTKDAAENHEALLCIQ
TGKTLSDPTRFKFDGDGYYLKSAAEMRALWDDEVPGACDNTLLIAERVQPYKEVWTHRDR
MPIFPVPEGHTQATWLREEVLRGLDRRFPDGVPQEYLTRAEYEIGVINEMGFPAYFLVVG
DLISHAREVGIRVGPGRGSAAGSLVAYAMGITNIDPIPHGLLFERFLNPERVSMPDIDID
FDDRRRGEMVRYATDRWGADRVAQVITFGTIKTKAAIKDSARVQFGQPGFAIADQITKAL
PPPIMAKDIPVSGITDPNHERYKEAAEVRALIESNPDVKKIYDTALGLEGLIRNAGVHAC
AVIMSSEPLMDAIPLWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTVIGDAIENIK
NNRGIDLDLDTLPLEDPPTYELLARGDTLGVFQLDGSAMRDLLRRMQPTGFEDIVAVLAL
YRPGPMGMNAHNDYADRKNGRQEVKPIHPELEEPLKDILADTYGLIVYQEQIMQIAQKVA
GYSLGRADILRRAMGKKKAEVLAAEFEGFEEGMLANGFSKPAIKALWDTILPFAGYAFNK
SHAAGYGLVSFWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLSDCRKMGITVLPPDVNE
SRVDFASVGEDIRFGLGAVRNVGSNVVASIIRAREEKGRFTDFSDYLNKIDALACSKKVT
ESLIKAGGFDSLGHPRKGLMLVHADAIDAVMGTKKAEAIGQFDLFGGADADESVTSVFNV
KIPEEEWDTKHKLALEREMLGLYVSGHPLNGVEHVLAQQADTAIPTILEGAIKDGAQVTV
GGILASVNRRINKNGLTWASAQLEDLAGGIEVLFFPQSYSVYGMDVVEDSVVLVKARVSV
RDDRISLIANDLAVPDLSQVGVAKPLSVSMPTRLCTPDKVGALKSVLTRHPGTSDVHVRL
ISGSKVTVLKVDDSLRVEPSSALMGDLKALLGPACLAT
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
gtggctgactcgttcgttcatctgcacaaccacaccgagtattcgatgctcgacggagcc
gcgaaggtcggtcccctgttcaaggaggccgagcggctggggatgacggcggtcgggatg
accgaccacgggaacatgtacggcgccagcgagttctacaacgtcgccgagaagcagggc
atcaagccgatcatcggcatcgaggcctacatcgcgcccgagtcgcggttcagcaccaag
cgcgtgcagtggggcgacccgagccagaaatccgacgacgtctccggctcgggctcgtac
acgcacatgacgatggtcgccgagaacgccaccgggctgcgcaacctgttcaagctgtcg
tcgctcgcgtcgatcgaggggcagctcggcaagtgggcccgcatggacgaggatctcatc
gcccaccacgccgagggcatcatcgccaccaccggttgcccgtccggggagatccagacc
aggctgcgtctgggccacgagcgcgaagcgctcgaggcggccgcgaagtggcaggagatc
tggggcaaggacaacttcttcctcgaactcatggaccacggcctgtccatcgagcgtcgg
gtccgtgagggcctgctcgacatcggccgcaagctcgacatcccgccgctggcgaccaac
gactgccactacgtcaccaaggacgccgccgagaaccacgaggcgctgctgtgcatccag
accggcaagacgctctcggatccgacccgcttcaagttcgacggtgacggctactacctg
aagtccgccgcggagatgcgggcgctgtgggacgacgaggtgccgggcgcgtgcgacaac
acgctcctgatcgccgagcgggtccagccctacaaggaggtgtggacccaccgggaccgg
atgccgatcttccccgtccccgaggggcacacgcaggcgacgtggctgcgcgaggaggtt
ctgcgcgggctcgaccggcgattcccggacggcgtgccgcaggagtacctcacccgcgcc
gagtacgagatcggcgtcatcaacgagatgggcttccccgcctacttcctcgtcgtcggt
gacctgatcagccacgctcgcgaggtcggcatccgcgtcggccccggccgcggttcggcc
gcgggctccctcgtcgcctacgcgatgggcatcacgaacatcgacccgatcccgcacggt
ctgctgttcgagcggttcctcaaccccgagcgcgtgtccatgcccgacatcgacatcgac
ttcgacgatcgccgccgcggtgagatggtgcgctacgccaccgaccggtggggggccgac
cgcgtggcccaggtgatcaccttcggcaccatcaagaccaaggccgcgatcaaggattcg
gcccgcgtgcagttcggccagcccggattcgccatcgccgatcagatcaccaaggcgctg
ccgccgccgatcatggccaaggacatcccggtctcgggcatcaccgatccgaaccacgag
cggtacaaggaggccgccgaggtccgggcgctgatcgaatccaacccggacgtgaagaag
atctacgacaccgcgctcggcctcgagggcctgatccgcaacgcgggcgtccacgcgtgc
gcggtgatcatgtcctccgagccgctgatggatgcgatcccgctgtggaagcgggcgcag
gacggcgcgatcatcaccggttgggactacccgtcgtgcgaggccatcggcctgctgaag
atggacttcctcggtctgcgcaacctcaccgtcatcggcgacgcgatcgagaacatcaag
aacaaccgcggcatcgacctcgacctcgacacgctgccgctcgaggatccgcccacgtac
gaactactggcccgcggcgacaccctcggcgtgttccagctcgacggcagcgcgatgcgg
gatctgctgcgccgcatgcagccgaccgggttcgaggacatcgtcgccgtgctcgcgctg
taccggcccggaccgatgggcatgaacgcccacaacgactacgccgaccgcaagaacggc
cggcaagaggtcaagccgatccaccccgagctcgaggaaccgctgaaggacatcctcgcc
gacacctacggtctgatcgtctaccaggagcagatcatgcagatcgctcagaaggtggcc
ggttactcgctcggacgagccgacatcctgcgccgcgcgatgggcaagaagaaggccgag
gtcctcgccgccgagttcgagggcttcgaggagggcatgctcgccaacggtttctccaag
ccggcgatcaaggccctgtgggacacgatcctgcccttcgccgggtacgcgttcaacaag
tcgcatgccgccgggtacggcctggtctccttctggacggcctacctcaaggccaactac
ccggccgagtacatggcgggcctgctcacgtcggtcggcgacgacaaggacaaggccgcg
gtctacctgtccgactgccgcaagatggggatcacggtgctgccgccggacgtcaacgag
tcgcgggtggacttcgcgtcggtgggggaggacatccgattcggcctcggcgcggtccgc
aatgtcggctccaacgtcgtcgcgtccatcatccgcgcgcgggaggagaagggccggttc
accgacttctccgactacctcaacaagatcgacgctctcgcgtgctcgaagaaggtcacc
gagtcgctgatcaaggccggcggcttcgactcgctcggccatccccgcaagggcctgatg
ctcgtgcacgccgacgcgatcgacgcggtgatgggcaccaagaaggccgaggcgatcggg
cagttcgacctgttcggcggcgcggatgccgacgagtcggtgacctcggtgttcaacgtg
aagatccccgaggaggaatgggataccaagcacaagctcgccctcgaacgggagatgctg
ggactgtacgtgtccgggcatccgctcaacggcgtcgagcacgtcctcgcccagcaggcc
gacaccgcgatcccgaccatcctcgaaggcgcgatcaaggacggcgcccaggtcaccgtg
ggcggcatcctggcctcggtgaaccgccgcatcaacaagaacggcctgacatgggcgtcg
gctcagctcgaggacctcgccggcgggatcgaggtgctgttcttcccgcagtcctactcc
gtgtacggcatggacgtcgtcgaggactccgtggtgctggtcaaggcccgggtgtcggtc
cgcgacgaccggatctcgttgatcgccaacgatcttgccgtgcccgacctgtctcaggtg
ggggtggccaagccgctgtcggtgtcgatgcccacccggttgtgcacccctgacaaggtg
ggtgcgctcaagagcgtgctcacccgccacccgggtacctcggatgtgcacgtgcggttg
atctccggcagcaaggtgaccgtgctgaaggtggacgacagcctgcgggtggagccctcg
tctgcgctgatgggggatctcaaagccctgctcgggccggcctgcctggcgacgtga
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