Rhodococcus ruber: CS378_08355
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Entry
CS378_08355 CDS
T05142
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
rrz
Rhodococcus ruber
Pathway
rrz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rrz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CS378_08355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rrz03021
]
CS378_08355
03400 DNA repair and recombination proteins [BR:
rrz03400
]
CS378_08355
Enzymes [BR:
rrz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CS378_08355
Transcription machinery [BR:
rrz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CS378_08355
DNA repair and recombination proteins [BR:
rrz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CS378_08355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
ATQ28735
UniProt:
A0A098BMD1
LinkDB
All DBs
Position
complement(1896940..1900446)
Genome browser
AA seq
1168 aa
AA seq
DB search
MLEGRILAVSSQTKAVAGIPGAPKRVSFAKIREPLEVPGLLDLQTDSFEWLIGSERWRAL
AAERGDGPVVGGLEEILAELSPIEDFSGSMSLSFSDPRFDEVKASVEECKDKDMTYAAPL
FVTAEFINNNTGEIKSQTVFMGDFPMMTDKGTFIINGTERVVVSQLVRSPGVYFDRAVDK
STEKDLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIVERFG
FSEIMMSTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKDKRYDLARVGR
YKINKKLGLNAGQPIEASTLTEEDIVATIEYLVRLHAGETTMTAPGGVEVPVEVDDIDHF
GNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGT
SQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHHSHYGRMCPIETPEGPN
IGLIGSLSVYARVNPFGFIETPYRKVENGIVTDQVDYLTADEEDRHVVAQANSPVDADGR
FSEERVLVRKKGGEVEFVAATEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQR
QAVPLVRNEAPVVGTGMELRAAVDAGDVVVTEKSGVIEEVSADFITVMADDGTRRTYRLR
KFDRSNQGTCSNQRPIVDEGQRVESGQVLADGPCTENGEMALGKNLLVAIMPWEGHNYED
AIILSQRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIVRIG
AEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGETGKVIGVRVF
SREDDDDLPPGVNELVRVYVAQKRKIQDGDKLAGRHGNKGVIGKILPQEDMPFLPDGTPV
DIILNTHGVPRRMNIGQILETHLGWIGKAGWNVQVAGDGERPEWAKNLSDDMLAADPDTN
IATPVFDGAREDELTGLLGSTLPNRDGEVMVGADGKATLFDGRSGEPFPYPVSVGYMYII
KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTI
KSDDVVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIAMADGD
DEDLERAAANLGINLSRNESATVDDLAN
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
gtgctggaaggacgcatcttggcagtctctagccagaccaaggcagttgccggaatcccc
ggagccccgaagagggtctcgttcgcaaagattcgcgaacctctcgaagtccccgggctc
ctcgatctacagacagattccttcgaatggctgatcggctccgagcgctggcgcgcgctc
gctgccgaacgcggtgacggtcccgtcgtcggcggcctcgaggagatcctggcggagctc
tctccgatcgaggacttctccgggtcgatgtccctgtccttctccgacccgcgcttcgac
gaggtcaaggcctccgtcgaggagtgcaaggacaaggacatgacgtacgcggcgccgctg
ttcgtcactgccgagttcatcaacaacaacaccggcgagatcaagagccagacggtcttc
atgggtgacttcccgatgatgaccgacaagggcaccttcatcatcaacggcaccgagcgc
gtcgtcgtctcgcagctggtgcgttccccgggcgtgtacttcgaccgcgcggtcgacaag
agcaccgagaaggacctgcacagcgtcaaggtgatcccgggccgcggcgcgtggctcgag
ttcgacgtcgacaagcgcgacaccgtcggcgtgcggatcgaccgcaagcgccgccagccg
gtcaccgtgctgctcaaggcgctcggctggaccaacgagcagatcgtcgagcgcttcggc
ttctccgagatcatgatgtccactctcgagaaggacaacacggccggcaccgacgaggcc
ctgctcgacatctaccgcaagctgcgcccgggcgagccgcccaccaaggagagcgcgcag
accctgctggagaacctcttcttcaaggacaagcgctacgacctggcgcgcgtgggacgt
tacaagatcaacaagaagctgggcctgaacgccggccagccgatcgaggcgtcgaccctc
accgaggaagacatcgtcgccaccatcgagtacctggtgcgcctgcacgcgggggagacc
accatgacggcgccgggcggcgtcgaggttcccgtcgaggtcgacgacatcgaccacttc
ggcaaccgtcgcctgcgcaccgtcggcgagctcatccagaaccagatccgcgtcggcctg
tcccgcatggagcgcgtcgtccgtgagcggatgaccactcaggacgtcgaggccatcacg
ccgcagacgctgatcaacatccgtcccgtcgtggccgcgatcaaggagttcttcggaacc
tcccagctgtcgcagttcatggaccagaacaacccgctgtcgggcctgacccacaagcgc
cgcctctcggcgctcggcccgggtggtctgtcccgtgagcgcgccggcctcgaggtccgc
gacgtccaccactcgcactacggccgcatgtgcccgatcgagaccccggaaggcccgaac
atcggcctgatcggctccctgtcggtgtacgcgcgggtcaacccgttcggtttcatcgag
accccgtaccgcaaggtcgagaacggcatcgtcaccgaccaggtcgactacctcaccgcc
gacgaggaggaccgccacgtcgtggcgcaggccaactcgccggtcgacgccgacggccgc
ttcagcgaggagcgcgtcctcgtccgcaagaagggcggcgaggtcgaattcgtcgcggcg
accgaggtcgactacatggacgtctcgccgcggcagatggtgtccgtggccacggccatg
attccgttcctcgagcacgacgacgccaaccgtgccctcatgggtgcgaacatgcagcgt
caggccgtgccgctggtgcgcaacgaggccccggtcgtcggtaccggcatggagctgcgt
gccgccgtcgatgcgggcgacgtcgtcgtcaccgagaagtccggcgtgatcgaggaggtc
tcggccgacttcatcaccgtgatggcggacgacggcacccgccgcacctaccgtctgcgc
aagttcgaccgttcgaaccagggcacctgctcgaaccagcggccgatcgtggacgagggg
cagcgcgtcgagtccggtcaggtcctcgccgacggcccctgcaccgagaacggtgagatg
gcgctcggcaagaacctcctcgtggcgatcatgccgtgggaaggccacaactacgaggac
gcgatcatcctgtcgcagcgcctcgtcgaggaggacgtgctcacctcgatccacatcgag
gagcacgagatcgacgcccgcgacaccaagctcggtgccgaggagatcacccgcgacatc
ccgaacgtctcggacgaggtcctcgcggacctggacgagcgcggcatcgtgcgcatcggc
gccgaggtgcgcgacggcgacatcctcgtcggcaaggtcaccccgaagggcgagaccgag
ctgaccccggaggagcggctgctgcgcgcgatcttcggtgagaaggcccgcgaggtgcgt
gacacgtcgctgaaggtgccccacggcgagaccggcaaggtcatcggcgtccgcgtgttc
tcgcgcgaggacgacgacgatctgcccccgggtgtcaacgagctcgtccgcgtgtacgtc
gcgcagaagcgcaagatccaggacggcgacaagctcgccggccggcacggcaacaagggc
gtcatcggcaagatcctcccgcaggaggacatgccgttcctgcccgacggcaccccggtg
gacatcatcctcaacacgcacggtgtcccgcgtcgtatgaacatcggccagatcctcgag
acgcatctcggctggatcggcaaggccggctggaacgtccaggtcgccggcgacggtgag
cgtcccgagtgggcgaagaacctgtccgacgacatgctcgccgccgatccggacaccaac
atcgccaccccggtgttcgacggtgcccgcgaggacgagctgacgggtctgctcggctcg
acgctgccgaaccgcgacggcgaggtcatggtcggcgcggacggcaaggcgacgctgttc
gacggccgttccggcgagccgttcccgtacccggtgtcggtcggctacatgtacatcatc
aagctgcaccacctggtcgacgacaagatccacgcccgttcgaccggcccgtactcgatg
atcacccagcagccgctcggtggtaaggcgcagttcggtggccagcggttcggtgagatg
gagtgctgggccatgcaggcctacggtgccgcgtacacgctgcaggagctgctcaccatc
aagtcggacgacgtggtgggccgcgtgaaggtctacgaggccatcgtcaagggcgagaac
atcccggagccgggtatccccgagtccttcaaggtgctcctcaaggaactccagtcgctg
tgcctgaacgtggaggtgctctccagcgacggcgcggccatcgcgatggccgacggcgac
gacgaggacctcgagcgggcggcggccaacctgggcatcaacctttcccgcaacgagtcg
gccacggtcgacgacctcgcgaactag
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