Rhodococcus ruber: CS378_15400
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Entry
CS378_15400 CDS
T05142
Symbol
dnaB
Name
(GenBank) intein-containing replicative DNA helicase
KO
K02314
replicative DNA helicase [EC:
5.6.2.3
]
Organism
rrz
Rhodococcus ruber
Pathway
rrz03030
DNA replication
Brite
KEGG Orthology (KO) [BR:
rrz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CS378_15400 (dnaB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rrz03032
]
CS378_15400 (dnaB)
Enzymes [BR:
rrz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
CS378_15400 (dnaB)
DNA replication proteins [BR:
rrz03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
CS378_15400 (dnaB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DnaB_C
DnaB
Intein_splicing
LAGLIDADG_3
AAA_25
ATPase
TniB
Motif
Other DBs
NCBI-ProteinID:
ATQ29981
LinkDB
All DBs
Position
complement(3394102..3397302)
Genome browser
AA seq
1066 aa
AA seq
DB search
MDDRGHSEYPGPPEEPAGDFGRQPPQDMVAEQSVLGGMLLSKDAIADVLEVLRPGDFYRP
AHQAVYDSILDLYSRGEPADPVTVSAELDRRGELRRIGGAAYLVTLTQTVPTAANASYYA
EIVAEKAILRRLVEAGTRIVQYGYAGSDGQDVAEVVDRAQAEIFEVSERRTSEDFVPLEE
LLQPTMDEIDSIASRGGISLGVPTGFAELDEITNGLHAGQMIIVAARPGVGKALSLDTAL
PTPGGWTTMGEVAVGDELLDAHGRPTRVLAATEVLHGRPCFEVEFSDGTVLVADEQHQWL
TSDGGPSRVRTTGELAASLSTGHIVGNVAPLRLPVADLPVAPFTLGAWLGGPSADPHVHM
RVQGEGGFAEELMTLGAHIPGAYQRASEQQRRELLAGLLDAGGHVEDDGTVRFESDCARL
RDDVAELLAGLGYTCAAAGSAVRFATDDDVFVLPSKAKAHKQTRTTVPRQRRIVAVRPVE
SVPVRCVEVDGEHLYLAGRSMVPTHNSTLGMDFLRSCSVKHGMASVMFSLEMGKTEIVMR
LLSAEAKIKLGDMRSGRMTDDDWTRLARRMSEISEAPLFIDDSPNLTMMEIRAKARRLKQ
KHDIRLVVVDYLQLMTSGKKVESRQQEVSEFSRSLKLLAKELEVPVVAICQLNRGPEQRT
DKKPMVSDLRESGCLTASTRVLRADNGCEVTLGELLVSGEQPVVWSLDERMRMVARSMTK
VFPSGRKEVFRLTLDSGRQVEATANHPFLTVDGWIPLGELTVGERVAAPRAVPAPLATHA
VSEDDVVALAERAVVESSVPSQAFALPKEQVAALVCHVWEGNGIVAWDGARGRADVRYPC
AARCLADDLARLLLRIGVFARIAAAETGWDVVVTGPENQAVFLHDVGAHGTAAQWVLAQL
GPKLVRHDADTVTPDVEAALGRLLAVEELAPSELVAAAASRSVGGSRSSLAQVAGVLDTA
DIDMLATNNVYWDEIVSIVSLGEQDVYDGTVPGTHNFVADGISVHNSLEQDADMVILLHR
PDAFERDDPRGGEADLILGKHRNGPTATITVAHQLHLSRFVDMARG
NT seq
3201 nt
NT seq
+upstream
nt +downstream
nt
gtggacgatcggggccattccgagtacccgggaccgccggaggagccggcgggcgacttc
ggccgccagcccccgcaggacatggtcgccgagcagtcggtgctcgggggcatgctgctc
agcaaggacgccatcgccgacgtgctcgaggtgctgcggcccggcgacttctaccgtccc
gcccaccaggcggtgtacgactcgatcctcgatctctacagtcgcggtgagccggccgac
cccgtcacggtgtccgcggaactcgaccggcgcggagagctccgccgcatcggcggcgcc
gcctacctggtgacgctgacccagaccgtgcctaccgccgcgaacgccagctactacgcc
gagatcgtcgccgagaaggccatcctgcgccgcctcgtcgaggccggcacccgcatcgtc
cagtacgggtacgccggctccgatgggcaggacgtcgccgaggtcgtcgaccgcgcccag
gccgagatcttcgaggtctcggagcgccgcacgtccgaggacttcgtcccgctcgaagag
ctgctgcagcccaccatggacgagatcgactcgatcgccagccgcggcggcatctccctg
ggtgtgcccaccgggttcgccgaactcgacgagatcaccaacggtctccacgccgggcag
atgatcatcgtcgccgcccgcccgggtgtcggaaaggcgctgtccctcgacactgcactg
cccacccccggcggctggacgaccatgggcgaggtcgccgtcggcgacgaacttctcgac
gcccacggtcgccccacccgggtgctggccgccaccgaggtgctgcacggccgcccctgc
ttcgaggtggagttctccgacggcacggtcctcgtcgccgacgagcagcatcagtggctc
acctccgacggcggcccgtcgcgggtacgcaccaccggggagctcgcggcctcactctcc
accggccacatcgtcggcaacgtcgctccgctgcgcctgcccgtcgccgatctgcccgtc
gccccgttcactctcggcgcctggctcggtggcccgtcggccgatccccacgtgcacatg
cgggtgcagggcgagggcggattcgccgaggaactcatgacgctcggcgcgcacatcccc
ggcgcctaccagcgggcgtcggaacagcagcggcgtgaactgctcgccggtctgctcgac
gccggcggccacgtcgaggacgacggcaccgtgcgattcgagtcggactgcgcccgcctg
cgggacgacgtcgccgagctgctggccggcctcggctacacctgcgccgccgccgggtcg
gcggtgcgattcgccaccgacgacgacgtgttcgtcctccccagcaaggccaaggcgcac
aagcagacccgtacgacggtgccgcggcagcggcgcatcgtcgccgtccgtcccgtcgag
tccgtaccggtgcggtgcgtcgaggtcgacggtgagcacctgtatctcgccgggcggtcg
atggtgcccacccacaactccacgctcggcatggacttcctgcggtcctgctcggtcaag
cacggcatggcttccgtcatgttctccctcgagatgggcaagaccgagatcgtcatgcgg
ctgctctccgccgaggcgaagatcaagctcggtgacatgcgttcgggccgcatgaccgac
gacgactggacgcgcctcgcccggcggatgagcgagatcagcgaagcgcccctgttcatc
gacgactcccccaacctgacgatgatggagattcgcgcaaaagcgcggcgcctcaagcag
aaacacgacatccggctggtcgtcgtcgactacctgcagctgatgacctccggtaagaag
gtcgagtcccgccagcaggaggtctccgaattctcccgtagcctcaagcttctcgcgaag
gagctcgaggtcccggtggtcgcgatctgtcagctcaaccgcggtcccgagcagcgcacc
gacaagaagcccatggtctccgacctgcgtgagtcgggttgcctcaccgcgagcacccgc
gtcctgcgcgcggacaacggctgcgaggtcaccctcggcgagttgctggtcagtggggaa
cagcccgtcgtctggtcgctggacgagcgcatgcgcatggttgcgcgctcgatgaccaag
gtgttcccgagcggacgcaaggaggtgttccggctgacgctcgactccggtcgtcaggtg
gaggccaccgcgaaccatcccttcctcaccgtcgacgggtggattcccctcggcgagctc
acggtcggcgagcgggtcgcggcgccccgcgccgttcctgctcctctcgccacgcacgcc
gtctccgaggacgacgtcgtcgcgctggccgagcgcgccgtcgtcgaaagttctgttccg
tcccaggcgttcgcgctgccgaaggaacaggtcgccgcgctcgtgtgccacgtgtgggag
ggcaacggaatcgtcgcgtgggacggagcccgagggcgggccgatgtccggtatccgtgc
gcagcccggtgcctcgccgacgacttggcccgtctgctcctgcgaatcggcgtcttcgct
cggatcgctgcggccgaaacaggttgggatgtcgtcgtcaccggcccggagaatcaggcc
gtcttcctgcacgacgtgggcgcccacggcaccgcggcacagtgggtgctcgcgcagctc
ggcccgaagctcgtacgtcacgacgccgacaccgtgacacccgacgtcgaggcggcgctg
ggccggctcctcgctgtcgaggaactcgctcccagcgagctcgtcgcggccgcggcttcg
cggtccgttgggggttcacggtcgagtctggctcaggtggcaggcgtcctcgacaccgcc
gacatcgacatgctcgccaccaacaatgtgtactgggacgagatcgtatccatcgtcagc
ctcggtgagcaggacgtgtacgacgggaccgtcccgggcacgcacaactttgttgccgat
ggcatctcggtgcacaacagtctcgagcaggatgccgacatggtgattctgctgcaccgg
ccagacgcgttcgaacgtgacgacccgcgcggcggtgaggcggatctgatcctcggcaag
caccgcaacggtccgacggccacgatcaccgtcgcgcaccagctgcacctgtcgcgcttc
gtggacatggcgcggggctga
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