Rhodococcus ruber: CS378_16140
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Entry
CS378_16140 CDS
T05142
Name
(GenBank) intein-containing DNA gyrase subunit A
KO
K02469
DNA gyrase subunit A [EC:
5.6.2.2
]
Organism
rrz
Rhodococcus ruber
Brite
KEGG Orthology (KO) [BR:
rrz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rrz03032
]
CS378_16140
03400 DNA repair and recombination proteins [BR:
rrz03400
]
CS378_16140
Enzymes [BR:
rrz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
CS378_16140
DNA replication proteins [BR:
rrz03032
]
Prokaryotic type
DNA Topoisomerases
CS378_16140
DNA repair and recombination proteins [BR:
rrz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
CS378_16140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_topoisoIV
DNA_gyraseA_C
LAGLIDADG_3
Intein_splicing
TPD52
Motif
Other DBs
NCBI-ProteinID:
ATQ30123
LinkDB
All DBs
Position
3563814..3567599
Genome browser
AA seq
1261 aa
AA seq
DB search
MTDTTLPPEGPGHDRIEPVDIQQEMQSSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAM
YDNGFRPDRGYVKSARAVAETMGNYHPHGDASIYDTLVRLAQPWSMRYPLVDGQGNFGSR
GNDGAAAMRYCVPGDTLVRMPHGQSIRISEILPGVEPDSDNEIDLKVLDRHGNPVMAEML
FHSGTHRTYTLSTVEGYEMRGTANHPVLCLVDVAGVPTLLWKLLDEIRSGDRVVLQRVPS
AEEHGRHNEYEAAAALLLGAFVSEGFVSENRAGFNNLDRDFFDRVVDAFDRVVGGRRYVY
SRVIKSGSTLHELDVQDLTMLRRSVLAGVIGQRSDRKSVPDFIWESPTALKRIFLGALFE
GDGSCSSLPRNTVQVSYSTRSLQLAKDVQQLLLEFGVVSRRYRHATGEYKVAVTNRRDAR
LFAERIGFVGCKQRKLEQVLAAAESSSPAAAARSMSTDYVPGLAAFLRTHGATDPANVNW
LRRHNVDRIERWEHRGDEIASHITEPDARAIAEELTDGRFYYAEVAFVAEGDVEPVYSLR
VDTDDHAFVTNGFVSHNTECRLTPLAMEMLREIDHETVDFQPNYDGRTLEPVVLPSRIPN
LLINGSGGIAVGMATNIPPHNLREVADAIYWALENFEADEEVTLAAVMERIKGPDFPTAG
LIVGGQGIKDAYTTGRGSVRMRGVVEIEEDARGKTSIVITELPYQVNPDNLITSIAEQVR
DGKIAGISDIHDESSDRAGMRIVVTVRRDAVAKVVLNNLYKHTQLQTGFGCNMLSIVDGV
PRTLRLDQMIRLYVTHQIEVIVRRTRYLLRKAEERAHILRGLVKALDALDDVIALIRASA
TVEDARAGLIGLLDVDEIQADAILAMQLRRLAALERQKIVDELAEIELEIDNLKDILAKP
ERQRAIVRDELKEIVDKYGDDRRTRIVAADGDVSDEDLIAREDVVVTITETGYAKRTKTD
LYRSQKRGGKGVKGADLKQDDIVKHFFVTSTHDWLLFFTTKGRVYRAKAYELPEANRTAR
GQHVANLLAFQPDERIQGVIRLKSYEDAPYLVLATRNGLVKKSRLSDFDSNRSGGIVAIN
LRGDDELVGAVLCSSDDDLLLVSAKGQSIRFVASDEVLRPMGRATSGVQGMRFNEDDALL
SLNVVREGTYLLVATSGGYAKRTPIEDYMAQGRGGKGVLTIQYDRKRGTLVGALIVDDDD
ELYAITSGGGVIRTPAKQVRKAGRQTKGVRLMNLGEGDTLLAIARNADEPEESAALEAKE
S
NT seq
3786 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacaccacgttgccgccggaggggccggggcacgaccgcatcgagcccgtcgac
atccagcaggagatgcagagcagctacatcgattacgcgatgagcgtgatcgtgggccgc
gccctgcccgatgtgcgggacggtctcaagccggtgcaccgccgcgtcctgtacgcaatg
tacgacaacgggttccgcccggaccgcggctacgtgaagtcggcacgtgccgtcgccgag
acgatgggcaactaccacccgcacggcgacgcctcgatctacgacacactcgtgcggctc
gcgcagccgtggtcgatgcgctacccgctcgtcgacggccagggcaacttcgggtcccgc
ggtaacgacggcgcagccgcgatgcggtactgcgtgccgggcgacacgctcgtgcgaatg
ccccacggccagagcatccgcatctcggagatcctgcccggcgtcgagcccgacagcgac
aacgagatcgacctgaaggttctcgatcgtcacggcaacccggtgatggccgagatgctg
ttccactcgggcacccatcgcacatacaccctcagcacggtcgagggctacgagatgcgc
ggaactgccaatcacccggtgctctgcctggtggatgtggcgggtgttcccaccctgctg
tggaagctgctggacgagatccgcagcggtgaccgggtggtgttgcagcgtgttccctcc
gccgaggagcacggcaggcacaacgagtacgaggcggctgccgcactgctgctcggtgcg
ttcgtcagtgagggcttcgtctcggagaaccgcgccgggttcaacaacctcgaccgggac
ttcttcgatcgcgtcgtggatgcgttcgatcgggtcgtcggcggccggcgctacgtctac
agccgggtgatcaagtcgggttcgacactgcacgagctcgacgtccaggacctgacgatg
ctgcggcgcagcgtgctggcgggtgtgatcggtcagcgcagcgaccgcaagagcgttccc
gacttcatctgggagtcgccgacagcactcaagcgcatcttcctcggtgccctgttcgag
ggcgacggatcgtgctcgtcgctaccacgcaacacggtgcaggtgtcgtactccacgcgg
agcctgcaactggcgaaggacgtgcagcagctgctgttggagttcggcgtcgtcagccgc
cggtatcggcacgcgaccggtgaatacaaggtcgccgtcaccaatcggcgtgacgcccgc
ctgttcgccgaacgtatcggcttcgtcggctgcaagcagcgcaagctcgagcaggtcctt
gccgcggcggagtcgagcagccccgcggcggcggcacgctccatgagcacggactacgtc
cccggtctcgcggcgttcctccgtacgcacggcgcgacggatccggcgaacgtcaactgg
ctccggcggcacaacgtcgatcggatcgaacgttgggagcaccgtggtgacgagatcgcg
tcgcacatcacggaacccgatgcccgagccatcgccgaggagctgaccgacggccggttc
tactacgccgaggtggccttcgtcgccgagggcgacgtggagccggtctacagcctgcgg
gtcgacaccgacgatcacgcgttcgtcaccaacggattcgtcagccacaacaccgagtgc
cggctcaccccgctcgcgatggagatgctgcgcgaaatcgaccacgagacagtcgatttc
caaccgaactacgacgggcgcacgctcgagccggtggttctccccagccgtatccccaac
ctgttgatcaacggttcgggcggtatcgcggtcggcatggccaccaacatcccgccgcac
aacctccgtgaggtggccgacgcgatctactgggcgctcgagaacttcgaggccgacgag
gaagtcaccctggccgccgtcatggagcgcatcaagggcccggacttcccgaccgcgggc
ctgatcgtcggcggccagggcatcaaggacgcgtacaccaccggccgcgggtcggtgcgg
atgcgcggtgtcgtggagatcgaggaggacgcccggggcaagacctcgatcgtcatcacc
gaactgccgtaccaggtcaacccggacaacctgatcacctcgatcgccgagcaggtccgg
gacggcaagatcgccggcatctccgacatccacgacgagtcgtcggaccgtgcgggcatg
cgcatcgtcgtgaccgtccgccgggacgccgtcgcgaaggtcgtcctgaacaacctctac
aagcacacgcagctgcagaccggcttcggctgcaacatgctctcgatcgtcgacggcgtg
ccgcgcaccctgcggctcgaccagatgatccggttgtacgtcacccaccagatcgaggtc
atcgtccggcggacccggtacctgctgcgcaaggcggaggaacgggcccacatcctgcgc
ggtctcgtgaaggcgctcgacgcgctcgacgacgtcatcgcgctgatccgcgcctcggcg
acggtggaggacgcacgcgccggcctcatcggactgctcgacgtcgacgagatccaggcc
gacgcgatcctggcgatgcagctgcgtcgtctcgcggccctggaacggcagaagatcgtc
gacgaactcgccgagatcgagctcgagatcgacaacctcaaggacatccttgccaagccc
gagcgtcagcgcgcgatcgtgcgggacgagctgaaggagatcgtcgacaagtacggcgac
gaccgtcgcacccgcatcgtcgcggccgacggggacgtctccgacgaggacctcatcgcc
cgcgaggacgtcgtcgtcaccatcaccgagaccggctacgccaagcgcaccaagaccgac
ctgtaccggtcccagaagcgtggcggcaagggcgtcaagggcgccgatctcaagcaggac
gacatcgtcaagcacttcttcgtgacgtccacgcacgactggctgctgttcttcaccacc
aagggccgggtgtaccgggcgaaggcctacgagctgccggaagccaaccgcaccgcgcgc
ggccagcacgtggccaacctgctggccttccagccggacgagcggatccagggcgtcatc
cggctcaagtcctacgaggacgccccctacctggtgctcgcgacccgcaacggcctggtc
aagaagtcgcgactgtcggacttcgactccaaccggtccggcggcatcgtcgcgatcaac
ctgcgcggcgacgacgaactggtcggtgcggtgctgtgctcgtcggacgacgatctgctg
ctggtctccgccaaggggcagtcgatccgtttcgtggcgagcgacgaggtgctgcggccg
atgggccgggcgacctcgggcgtccagggcatgcggttcaacgaggacgacgccctgctc
tcgctcaacgtggtccgtgagggcacgtacctgctggtcgcgacgtccggtggatacgcc
aagcgcaccccgatcgaggactacatggcgcagggacgcggcggcaagggcgtgctgacc
attcagtacgaccgcaagcgtggcactctggtcggagcgctcatcgtggacgacgacgac
gagttgtacgcgatcacctcgggcggtggcgtcatccggacccccgcgaagcaggtgcgc
aaggccggccgacagacgaagggtgtgcggttgatgaacctgggggagggggacacgttg
ctggcgatcgcacgcaacgccgacgagcccgaggagagcgccgcactcgaagcgaaggag
tcgtaa
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