Rhodococcus ruber: CS378_18905
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Entry
CS378_18905 CDS
T05142
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
rrz
Rhodococcus ruber
Brite
KEGG Orthology (KO) [BR:
rrz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rrz03032
]
CS378_18905
03400 DNA repair and recombination proteins [BR:
rrz03400
]
CS378_18905
Enzymes [BR:
rrz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
CS378_18905
DNA replication proteins [BR:
rrz03032
]
Prokaryotic type
DNA Topoisomerases
CS378_18905
DNA repair and recombination proteins [BR:
rrz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
CS378_18905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
HC2
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
ATQ30598
UniProt:
A0A098BP44
LinkDB
All DBs
Position
4155462..4158392
Genome browser
AA seq
976 aa
AA seq
DB search
MAARDNSTSNGSSGTRRLVIVESPTKAKKIAPYLGRDYVVEASVGHIRDLPRGAADVPAK
YKGESWARLGVNVDHGFEPLYVVSPEKKSKVTELKGLLKDADELYLATDPDREGEAIAWH
LLETLKPKVPVRRMVFHEITEPAIRAAAEHTRDLDNNLVDAQETRRILDRLYGYEVSPVL
WKKVMPRLSAGRVQSVATRVIVQRERERMAFRSATYWDIAATLDAGADASPRSFGARLVG
VDGARVAAGRDFGADGRLKSTGVVVLDEAYARRLADALHGVDLTVTSVESKPYTRKPYAP
FMTSTLQQEAGRKLRFSSERTMRIAQRLYENGYITYMRTDSTTLSESAIAAARAQATELY
GAEYVHATPRQFTRKVKNAQEAHEAIRPAGDVFATPGELHSRLDTDEYRLYELIWQRTVA
SQMADARGTTLTLRITGTAASGEECTFSSSGRTITFPGFLRAYVESVDEEAGGQSDDAES
RLPNLSEGQRVTATKLDPDGHSTNPPARYTEASLIKALEDLGIGRPSTYASIIKTILDRG
YVYKRGSALVPSWVAFAVIGLLEAHFGRLVDYGFTAAMEDDLDEIAGGHEQRTDWLSSFY
FGGAHGAENSVAREGGLKKMVGENLEDIDAREINSIRLFDDAEGREIHVRVGRFGPYLER
MVADPDAPDGEPISQRANLPDDLPPDELTLEYAEKLFSTPQEGRVLGVDPATGNEIVARE
GRFGPYVTELLREPEPEPEPDITPIPVEAAPSAGGTTTVAKKAAKKAPAKKATKKAAGPK
PRTASLLKSMELSTVTLEDALRLLSLPRVVGVDPATGEEITAQNGRYGPYLKKGTDSRSL
ANEEQMFTVTLEEALKIYSEPKRRGRQAAATPPLRELGTDPVSDKPMVIKDGRFGPYVTD
GETNASLRKGDEVDTITDERASELLADRRARGPAKKTAKKTAAKKAPAKKTAAKKTVAKK
TTAKKTTAKKTAAQKE
NT seq
2931 nt
NT seq
+upstream
nt +downstream
nt
gtggcagcacgggacaacagcacgtcgaacggctcgtcgggcacgcgtcggctcgtcatc
gtcgagtccccgaccaaggcgaagaagatcgcgccctacctgggccgtgactacgtcgtc
gaggcgtccgtcggacacatccgcgacctgccacgcggggccgccgatgtgccggccaag
tacaagggcgagtcgtgggcccgcctcggtgtgaacgtcgaccacggtttcgagccgctg
tacgtcgtcagtcccgagaagaagtccaaggtcaccgagctgaaggggctgctgaaggac
gcggacgagctgtacctcgcgaccgaccccgaccgggagggcgaggccatcgcctggcac
ctgctcgagacgctcaagccgaaggtcccggtccgccggatggtcttccacgagatcacc
gagccggccatccgggccgccgcagaacacacccgcgacctcgacaacaacctggtcgac
gcgcaggagacccgccggatcctcgaccgcctctacggctacgaggtcagcccggtgctg
tggaagaaggtcatgccgcggctgtcggcgggccgcgtgcagtccgtcgccacccgggtc
atcgtccagcgcgaacgtgagcgcatggccttccggtccgcgacgtactgggacatcgcc
gccaccctcgacgccggcgccgacgcgagcccccgatcgttcggggcacggctcgtcggt
gtcgacggcgcccgcgtcgccgccggccgcgatttcggcgccgacggccggctcaagtcc
accggcgtcgtcgtgctcgacgaggcgtacgcgcgacgactcgccgacgctctgcacggc
gtggacctgacggtgacgtcggtcgagagcaagccgtacacccgcaagccgtacgcaccg
ttcatgacgtcgacgctgcagcaggaggcgggccgcaagctgcggttctcgtccgagcgc
acgatgcgcatcgcccagcgcctgtacgagaacggctacatcacgtacatgcgtaccgac
tcgacgaccctgtccgagagcgcgatcgccgccgcccgggcccaggccaccgagttgtac
ggcgcggagtacgtgcacgccaccccgcggcagttcacccgcaaggtcaagaacgcgcag
gaggcccacgaggcgatccgtccggccggtgacgtgttcgccacgcccggcgaactgcac
tcgcgtctcgacaccgacgagtaccgcctctacgaactcatctggcagcgcaccgtcgcc
tcccagatggccgacgcgcggggcacgaccctgacactgcgcatcaccggcaccgccgcg
agcggcgaggaatgcacgttctcgtcgtccggtcgcaccatcaccttccccggcttcctg
agggcgtacgtcgagagcgtcgacgaagaggccggcggccagtccgacgacgccgaatcc
cggctgccgaacctgtccgagggacagcgcgtcaccgcgacgaagctcgacccggacggt
cactcgaccaacccgccggctcgctacaccgaggccagcctgatcaaggctctcgaggac
ctcggcatcggccggccgtcgacgtacgcgtcgatcatcaagaccatcctcgaccgcggc
tacgtctacaagcggggcagcgccctggtcccgtcgtgggtggcgttcgcggtcatcggg
ctgctcgaggcgcatttcggacgcctcgtcgactacggcttcaccgccgccatggaggac
gacctcgacgagatcgcgggtggtcacgagcagcgcacggactggctgtcgagcttctac
ttcggtggcgcccacggagccgagaactcggtggcgcgcgagggtggcctgaagaagatg
gtgggcgagaacctcgaagacatcgacgcccgcgagatcaactccatccggctgttcgac
gacgccgagggccgggagatccacgtgcgcgtgggccggttcggcccctacctcgagcgg
atggttgccgatcccgacgctcccgacggggaaccgatctcccagcgtgcgaacctgccc
gacgacctgccgccggacgagctgacgctcgagtacgcggagaagctgttctcgaccccg
caggagggccgggtcctcggcgtcgacccggccaccggcaacgagatcgtcgcgcgggag
ggccgcttcggtccgtatgtgaccgagttgctgcgtgagccggagccggagcccgaaccc
gacatcacgccgatcccggtcgaggcggcgccctcggcgggcggcaccaccaccgtggcg
aagaaggctgcgaagaaggcaccggcgaagaaggccaccaagaaggcggccggtcccaag
ccgcggacggcgtcgctgctcaaatcgatggaactgtcgacggtgacgctcgaggacgca
ctgcgactgctgtcgttgccgcgggtcgtcggggtcgatcctgcgacgggtgaggagatc
accgcccagaacggtcgctacgggccgtacctgaagaagggcaccgactcgcggtcgctg
gcgaacgaggagcagatgttcacggtcaccctcgaggaggcgctgaagatctactccgag
ccgaaacgacgcggtcggcaggccgccgccacgccgccgctgcgggaactgggcaccgac
ccggtcagcgacaagccgatggtgatcaaggacggccgcttcggcccgtacgtcacggac
ggcgagaccaacgccagcctccgcaagggcgacgaggtcgacaccatcaccgacgagcgt
gcctccgagctgctcgcggatcgacgtgcccgtggtccggcgaagaagaccgccaagaag
accgctgcgaagaaggctcccgcgaagaagacggcggccaagaagaccgtcgccaagaag
acgactgcgaagaagacgactgcgaagaagaccgccgcgcagaaggagtga
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