Rhodococcus ruber: CS378_21265
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Entry
CS378_21265 CDS
T05142
Name
(GenBank) helicase
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
rrz
Rhodococcus ruber
Pathway
rrz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rrz00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
CS378_21265
09124 Replication and repair
03420 Nucleotide excision repair
CS378_21265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rrz03021
]
CS378_21265
03400 DNA repair and recombination proteins [BR:
rrz03400
]
CS378_21265
Enzymes [BR:
rrz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CS378_21265
Transcription machinery [BR:
rrz03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
CS378_21265
DNA repair and recombination proteins [BR:
rrz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
CS378_21265
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
ATQ31016
LinkDB
All DBs
Position
complement(4664411..4666069)
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AA seq
552 aa
AA seq
DB search
MPDGPLIVQSDKTLLLEVDHALANEARQAIAPFAELERAPEHVHTYRVTPLALWNARAAG
HDAEQVVDALVSHSRFAVPQPLLVDIVDTMARYGRLQLVKNPAHGLTLVSLDRAVLEEVM
RNKKIAPMLGARLDDDTVIVHPSERGRLKQMLLKVGWPAEDLAGYVDGEAHAISLDFESH
PWHLRDYQEMAADSFWAGGSGVVVLPCGAGKTMVGAAAMAKAGATTLILVTNTVAGRQWK
RELIARTSLTEDEIGEYSGEKKEIRPVTIATYQVITRKSKGEYRNLELFDSRDWGLMIYD
EVHLLPAPVFRMTADLQSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGWI
APAECVEVRVTLTDAERMAYAVAEPEERYKLCSTAHTKIAVVKSILARHRDSPTLIIGAY
LDQLDELGAALGAPVIKGSTRNKEREELFDRFRAGELKVLVVSKVANFSIDLPEASVAVQ
VSGTFGSRQEEAQRLGRLLRPKHDGGQAHFYSVVARDTLDAEYAAHRQRFLAEQGYAYRI
TDADDLLGPAIG
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgacggaccgttgatcgtccagtccgacaagaccctgctcctcgaggtcgaccac
gcgctcgcgaacgaggcccggcaggcgatcgccccgttcgccgaactcgaacgcgccccc
gagcatgtgcacacctaccgcgtcaccccgctggcgttgtggaacgcccgggccgcgggg
cacgacgccgagcaggtcgtcgacgccctcgtcagccactcccggttcgccgtcccgcag
ccgctgctcgtcgacatcgtcgacaccatggcccgctacggacggctgcagctggtgaag
aatcccgcgcacggcctgaccctggtcagtctcgaccgggcggtgctcgaggaggtgatg
cgcaacaagaagatcgccccgatgctcggcgcgcggctcgacgacgacaccgtgatcgtg
catccgagcgagcgtggccggctcaagcagatgctgctcaaggtgggctggccggccgag
gacctcgccggctacgtcgacggggaggcgcacgcgatcagcctcgacttcgagtcccac
ccctggcatctgcgggactaccaggagatggccgcggactcgttctgggccggcggctcc
ggcgtggtcgtgctgccctgcggggcgggcaagacgatggtgggtgcggccgcgatggcc
aaggccggtgccaccaccttgatcctggtgaccaacaccgtcgcggggcggcagtggaag
cgcgaactgatcgcgcgcacgtcgctcaccgaggacgagatcggcgagtactccggggag
aagaaggagatccgcccggtcaccatcgccacctaccaggtgatcacccgcaagtcgaag
ggcgagtaccgcaacctcgaactgttcgactcccgcgactgggggctgatgatctacgac
gaggtgcacctgctgcccgcaccggtgttccggatgacggccgatctgcagtcccggcgc
cggctcggcctcaccgcgacgctcgtgcgcgaggacggccgcgagggcgacgtgttctcg
ctcatcggtcccaagcgctacgacgcgccgtggaaggacatcgaggcccagggctggatc
gcgcccgcggagtgcgtggaggtgcgggtgaccctgaccgacgcggaacggatggcgtac
gcggtcgccgagcccgaggaacggtacaagctgtgctcgaccgcgcacacgaagatcgcg
gtggtgaagtcgatcctggcccggcaccgcgactcccccaccctgatcatcggcgcgtac
ctcgatcagctcgacgaactcggcgcggcgctcggcgccccggtgatcaagggctcgacc
cggaacaaggagcgcgaggagctgttcgaccgcttccgcgccggcgagctgaaggtgctc
gtcgtgtccaaggtcgcgaacttctcgatcgacctgcccgaggcctcggtggcggtgcag
gtgtccggcacgttcggctcgcgtcaggaggaggcgcagcgtctcggccggttgctgcgt
cccaagcacgacggtggccaggcgcacttctactcggtcgtcgcgcgcgacaccctcgac
gccgagtacgccgcgcaccggcagcggttcctcgccgaacagggctacgcgtaccggatc
accgacgccgacgatctgctcgggcccgccatcggctga
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