Rhodococcus ruber: CS378_21830
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Entry
CS378_21830 CDS
T05142
Name
(GenBank) Fpg/Nei family DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
rrz
Rhodococcus ruber
Pathway
rrz03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rrz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CS378_21830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rrz03400
]
CS378_21830
Enzymes [BR:
rrz01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
CS378_21830
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
CS378_21830
DNA repair and recombination proteins [BR:
rrz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
CS378_21830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
Zn_ribbon_TFIIB
NFACT_N
DUF7129
DUF5795
TMEM106_N
RNHCP
Motif
Other DBs
NCBI-ProteinID:
ATQ31117
UniProt:
A0A098BSJ5
LinkDB
All DBs
Position
complement(4773118..4773984)
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AA seq
288 aa
AA seq
DB search
MPELPEVEALAVFLREHAVGAVVGRIDVAALSVLQTADPPVTALQGRDVTGVSRFGKFLA
VDCAGLWLVVHLSRAGWLRWQDNPSPAPPKLGRGPLALRVHLFTPEAATPAFDLTEAGTR
KRLAVWIVDRPQQVPGIARLGPDALAVTADELAARLAGSTARLKTALTDQQVLAGIGNAY
SDEILHVARLSPFAPAGRLGEEQRQALYDAMRTVLLDAVTRSVGQDAARLKGEKRSGMRV
HARAGLPCPECGDTVREVAYAERSFQYCPTCQTGGRILADRRLSRLVK
NT seq
867 nt
NT seq
+upstream
nt +downstream
nt
atgcccgagctgcccgaggtggaagccctggcggtgttcctgcgcgagcacgccgtcggt
gccgtcgtcggccggatcgacgtggcggcgctcagcgtcctgcagaccgccgacccgccg
gtcaccgcgctgcagggccgcgacgtcaccggcgtgtcccgattcgggaagttcctcgcg
gtcgactgcgccgggctctggctcgtcgtgcacctgtcacgcgccgggtggctgcgctgg
caggacaacccgtcgccggccccgccgaagctgggccgcggcccactcgcgctgcgggta
catctgttcacccccgaggccgccacccccgccttcgacctcaccgaggccggcacccgc
aaacgtctggccgtgtggatcgtcgaccgcccgcagcaggtgcccggcatcgcccggctc
ggtcccgacgccctggccgtcaccgccgacgagctggccgcgcgactggccggcagcacc
gcacgcctgaagaccgccctcaccgaccagcaggtgctcgccgggatcggcaacgcctac
tccgacgagatcctgcacgtcgcccggctgtcgccgttcgcgccggcgggccggctcggc
gaagagcaacgacaggcgctgtacgacgcgatgcgcacggtgctgctcgacgccgtcacc
cgttccgtggggcaggacgccgcacggctcaaaggcgagaagcggtcggggatgcgggtc
cacgcccgcgccgggctgccctgcccggagtgcggcgacaccgtccgcgaggtcgcctac
gccgagcgctccttccagtactgccccacgtgtcagaccggcggcaggatcctcgcggac
cggcggctgtcgcggctggtcaagtga
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