Rhodococcus ruber: CS378_23015
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Entry
CS378_23015 CDS
T05142
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
rrz
Rhodococcus ruber
Pathway
rrz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rrz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
CS378_23015 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rrz03400
]
CS378_23015 (recD)
Enzymes [BR:
rrz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
CS378_23015 (recD)
DNA repair and recombination proteins [BR:
rrz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
CS378_23015 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
RecD_N
AAA_11
Viral_helicase1
UvrD-helicase
Helicase_RecD
AAA_22
SH3_13
TraI_hel_assoc_N
AAA_24
Mg_chelatase
Motif
Other DBs
NCBI-ProteinID:
ATQ31327
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All DBs
Position
5032973..5034841
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AA seq
622 aa
AA seq
DB search
MTNAQVAQRGKGALRVFNEAGVLAAADVHVALRLAQLAGETAEEVHLATALAVRAVRAGS
VCLDLTRLREITVDESAEVDLAALPWPEDDAVVAGLRRSPLVVGGDRGPLRPLRLVETAD
GPLLYLDRYFRQEEAVRRILDARGLGHPVVDEPALERGLRELFRDQHDPGRPSAAPDRQR
IAAALAATGWTTVIAGGPGTGKTHTVARILALLTALHGPALRIGLAAPTGKAAARLQESV
REQAGPLGLRADLTAMTLHRMLGWQRGRTRYRYHAGNHLPYDVVVVDETSMVSLTMMCRL
LEAVRSGTRLILVGDPDQLTSVDAGAVLADLVARPVTAAGNPVLGRVVAADLDAGDDPAE
ASLSAGERNRLRGGVIRLSRGRRFGGDIAHLAVAVREGDADAVMRILDGGGPEVSFHAPD
DLEALRRDVVSTAATVTAAAVAGDDVTALEKFETHRLLCAHREGPYGVQWWARRAMEWIA
ADTGRRLDTERWYPGQPLLVTANDHETRIYNGDTGVVVVDADGEPVAAFARGKEPFRLHP
SRLSAVQTVYAMTIHRSQGSQYGTVSVILPPPESSLLTRELLYTAITRARGHVRLIGTEE
AVRAGVGRRVLRASGLRRQPRA
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
gtgaccaacgcccaggtggcccagcgcggcaagggtgccctgcgggtcttcaacgaggcc
ggggtgctcgcggccgccgacgtgcacgtcgcgctgcggctcgcccagctggcgggggag
accgccgaggaggtgcacctcgccactgcgctggccgtgcgcgccgtgcgcgccggttcg
gtgtgcctggacctgacccggctgcgcgagatcaccgtcgacgagtccgccgaggtggat
ctcgcggcgctgccgtggccggaggacgacgccgtcgtcgccggcttgcggcgcagcccg
ctcgtcgtcggcggcgaccgcggcccgctgcgtccgctgcgcctggtcgagaccgccgac
ggtccgctgctgtacctcgaccgctacttccgtcaggaggaggcggtccggcggatcctc
gacgcccgcgggctcggtcatcccgtcgtcgacgagccggcgctcgagcggggactgcgc
gagttgttccgcgaccagcacgaccccggtcgtccgtccgccgcaccggaccggcagcgc
atcgccgcggcgctggccgccacggggtggaccacggtgatcgcgggcgggccgggcacc
ggcaagacccacaccgtcgcccggatactcgcgctgctgaccgcgctgcacggtcccgcc
ctgcggatcggactggccgcgcccaccggcaaggccgcggcccggctgcaggaatccgtc
cgcgagcaggccgggccgctgggcctgcgcgccgacctgaccgcgatgaccctgcaccgc
atgctcggctggcagcgcggccgcacccggtaccgctaccacgccggcaaccacctgccc
tacgacgtcgtggtcgtcgacgagacgtcgatggtgtcgctgaccatgatgtgccggctg
ctcgaggccgtccgctccggcacccggctgatcctggtgggcgacccggaccagctgacg
tcggtcgacgccggcgccgtcctggccgacctcgtcgcccgtcccgtgaccgcggcggga
aaccccgtcctcgggcgcgtcgtcgcagccgacctcgatgccggcgacgaccccgccgag
gcgtcgctctccgcgggtgagcggaaccggttgcgcggcggcgtgatccggctcagccgc
ggccggcggttcggcggcgacatcgcgcacctcgccgtcgccgtgcgggagggcgacgcc
gacgcggtgatgcggatcctcgacggtggtggccccgaggtgtccttccacgcgccggac
gacctcgaggccctgcggcgcgacgtcgtctccaccgccgcgaccgtcaccgccgccgcc
gtcgcgggcgacgacgtgaccgcgctcgagaagttcgagacgcaccgcctgctgtgcgcg
caccgggaggggccgtacggggtgcagtggtgggcgcggcgggcgatggagtggatcgcc
gccgacaccggccggcggctcgacaccgagcgctggtacccggggcagccgctgctcgtc
accgccaacgaccacgagacccgcatctacaacggcgacaccggcgtcgtggtcgtcgat
gcggacggcgaacccgtcgcggcgttcgcgcgcggcaaggagccgttccggctccacccc
agtcggctgtcggccgtgcagacggtgtacgccatgacgatccaccgcagccagggcagc
cagtacggcacggtctcggtgatcctgcccccacccgaatcctcgctgctgacccgcgaa
ttgctgtacaccgcgatcacccgggcgcgcggtcacgtgcgcctgatcggcaccgaggag
gcggtccgcgccggggtcgggcggcgggtgttgcgagccagcggactgcgccggcagccg
cgcgcctga
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