Rhodococcus ruber: CS378_23760
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Entry
CS378_23760 CDS
T05142
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rrz
Rhodococcus ruber
Pathway
rrz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rrz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CS378_23760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rrz03019
]
CS378_23760
03009 Ribosome biogenesis [BR:
rrz03009
]
CS378_23760
Enzymes [BR:
rrz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CS378_23760
Messenger RNA biogenesis [BR:
rrz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CS378_23760
Ribosome biogenesis [BR:
rrz03009
]
Prokaryotic type
rRNA helicases
CS378_23760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
UvrA_inter
CMS1
HEM4
Flavi_DEAD
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ATQ31459
LinkDB
All DBs
Position
5190073..5191971
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AA seq
632 aa
AA seq
DB search
MQDPEADTATPTFADLDIDARVLQALSDVGYENPSPIQAATIPPLLEGRDVVGLAQTGTG
KTAAFAVPILSRIDTAVKRPQALILAPTRELALQVAEAFGKYSAHIPGLHVLPIYGGQSY
GVQLSGLRRGAQVIVGTPGRVIDHLAKGTLDISELEFLVLDEADEMLTMGFQEDVERILA
DTPESKQVALFSATMPGAIRRLSKQYLHDPVEITVKSKTTTSANISQRWVLVSHQRKLDA
LTRILEVEQFEAMIIFVRTKQATEDLAERLRARGFSAAAINGDIVQAQRERTIGQLKSGA
LDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGDALLFVAPRERH
LLKAIERATRQPLTEIQLPSVEDVNAQRVEKFNDSITEALTSDHLALFRRFVEDYEREHD
VPLADIAAALAVLSRDGESFLMEAEPEPVAPPRREREPRERPPRRFDDDGASRVGRDGQE
LVTYRIAVGKRHRVVPGAIVGAIANEGGLRRSDFGHISIRPDHSLVELPKDLSPETLEAL
RGTRISGVLIQLQPDSGAPSGRPSSYRPRDDRGERRQGERREYGGKKDWGDRGGRGKDFG
GRGDKPHRGFRERSGERGQSGGHGTGGYRGRD
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
gtgcaagaccccgaagccgacaccgccacccccacgttcgccgatctcgacatcgacgcc
cgtgtgctgcaggcgctttcggatgtgggctacgagaacccgtcgccgatccaggcggcc
accatcccgccgctgctggaggggcgcgacgtcgtcggtctcgcgcagaccggtaccggc
aagaccgccgcgttcgcggtgccgatcctgtcgcggatcgacaccgcggtgaaacggccc
caggcgctgatcctggcgcccacccgcgagctcgccctgcaggtcgccgaggctttcggc
aagtattcggcgcacatcccgggtctgcacgtgctgcccatctacggcggccagagctac
ggcgtgcagctgtccgggctgcgccggggcgcgcaggtcatcgtgggcacgcccggacgt
gtgatcgatcacctcgccaagggcaccctcgacatctccgagctcgagttcctcgtgctc
gacgaggccgacgagatgctcaccatgggcttccaggaggacgtcgagcggatcctcgcc
gacacccccgagagcaagcaggtcgcgctgttctcggcgaccatgccgggcgccatccgc
cggttgtccaagcagtatctgcacgacccggtcgagatcacggtcaagtcgaagacgacg
acgtcggcgaacatctcccagcgctgggtgctcgtgtcgcaccagcgcaagctcgacgcc
ctgacccggattctcgaggtcgagcagttcgaggcgatgatcatcttcgtccggacgaag
caggccaccgaggacctcgcggagcggctgcgggcccggggcttctcggccgccgcgatc
aacggcgacatcgtccaggcccagcgcgaacgcaccatcgggcagctcaagagcggcgcg
ctggacatcctcgtcgcgacggacgtcgcggcccgcggcctggacgtcgaccgcatcagc
cacgtcgtgaactacgacatcccgcacgacaccgagtcctacgtgcaccgcatcggccgc
accggccgggccggccgcagcggtgacgcgctcctgttcgtcgccccccgcgagcggcac
ctgctcaaggcgatcgagcgggccacccggcagccgctcaccgagatccagctgccgtcg
gtggaggatgtcaacgcccagcgcgtcgagaagttcaacgactccatcaccgaggcgctc
acctccgaccatctggcgttgttccggcgattcgtcgaggactacgagcgcgagcacgac
gtgcctctcgccgacatcgcggcggcgctcgcggtgctctcccgcgacggggagtcgttc
ctcatggaggccgaacccgagcccgtggcaccgccgcggcgcgaacgcgagccgcgggag
cggccgccgcgccggttcgacgacgacggtgcgtcccgtgtcgggcgggacggacaggaa
ctggtcacctaccgcatcgccgtgggcaagcgccaccgcgtggtgcccggcgcgatcgtc
ggcgccatcgccaacgagggcggcctgcgccgcagcgacttcgggcacatcagcatccgc
ccggatcacagcctcgtcgagctgccgaaggacctgtcgccggagacgctcgaggcgttg
cggggcacccgcatctcgggtgtgctgatccagctgcagcccgacagcggggccccgtcg
ggccgcccgtcgtcctaccgtccgcgcgacgaccgcggggagcgccgccagggtgagcgc
agggagtacggcggcaagaaggactggggcgatcgtggcggccgcggcaaggacttcggc
gggcgcggcgacaagccgcaccgtggcttccgggaacgctcgggcgagcgcgggcagtcc
ggtggacacggcaccggcggctatcgcgggcgcgactga
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