Rhodococcus ruber: CS378_24305
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Entry
CS378_24305 CDS
T05142
Name
(GenBank) 3'-5' exonuclease
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
rrz
Rhodococcus ruber
Pathway
rrz03030
DNA replication
rrz03430
Mismatch repair
rrz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rrz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CS378_24305
03430 Mismatch repair
CS378_24305
03440 Homologous recombination
CS378_24305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rrz03032
]
CS378_24305
03400 DNA repair and recombination proteins [BR:
rrz03400
]
CS378_24305
Enzymes [BR:
rrz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CS378_24305
DNA replication proteins [BR:
rrz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CS378_24305
DNA repair and recombination proteins [BR:
rrz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CS378_24305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TerD
RNase_T
BRCT
PTCB-BRCT
Rv2179c-like
DNA_pol_A_exo1
3HCDH_RFF
Motif
Other DBs
NCBI-ProteinID:
ATQ31558
LinkDB
All DBs
Position
5315509..5317488
Genome browser
AA seq
659 aa
AA seq
DB search
MAGTLLPGTGRRQARSAWRSRRCREHQSLCSGAPVGPAAEQSEVGQVQVIDTQSHASGSR
TLPKGHRWVVVDVETSGLRAYAHRVLSVAALVLREDGSVEQEYSTLVDPGCDPGPVHVHR
LTRERLAGAPRFEQISGELAEVLAGGTIVAHNAAFDYGFLDAEFRRAGAEIPVKHRLCTL
ALSRRLELDVADHKLSTLAAHWQVQQLLEHDAYDDARVLSEVFVRSASLAESLQLPLPVV
DCLSRRSAYPDSVPRVPCEWKNPGRLSLDVGLVQGMKVVITGHTTTPRVPLAGRMTDAGL
DVMNSVSRQTSVVVCNDPGVQTGKIRKAMAEGIPVVTEQQLEDMLTRVLPGEPKTRPVTE
VAAPPAEPVIEPPPQPETAESVASSLPERMLTGQKPKLWQGRRVLLLGGTHLDAVLMRSR
LVQLGARPSLNLTAAVTDVLMLEGGDSDRRMPRITARELPVLTKTDVSAAVEKGVVPSHM
RIESRISAPALARGEVIDLPARKMSWTVNVAWRAETDDFDVDVVAFLLGEDEKVDSDDDF
VFYNNPTAEVGAVELSIDGSSEQSVRLDLAALPDECARIAIAAAIDGERTFGELGAVSVS
VDGEDGTAATFVLDAGTTERTMVLTEIYRRAGKWRLRAVGQGYDDGLTELAVRYGVDVD
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atggctggcacgttactgcccggcacgggtcggaggcaggcgcgctcggcgtggcgcagt
cggcggtgtcgtgagcatcagtcactatgttcgggtgcgccggtggggccggcagcagaa
cagtcggaggtagggcaggtgcaggtgatcgacacgcagtcgcacgcgtcgggttcgcgg
acgctgccgaagggtcatcgctgggtggtcgtcgacgtcgagacctccggcctgcgcgcc
tatgcgcatcgggtgctcagcgtcgccgcgctggtgttgcgggaggacggcagcgtcgag
caggagtactcgacgctcgtcgatccgggttgcgaccccggcccggttcacgtgcaccgg
ttgacgcgcgaacggctcgccggtgccccgcgcttcgagcagatttctggtgagctcgcc
gaggtgctggccggcgggacgatcgtcgcccacaacgcggccttcgactacggattcctc
gacgcagagtttcggcgcgctggagccgagatcccggtcaaacaccggctgtgcactctc
gcactgtcgaggcggctcgagctggacgtggccgatcacaagctctccaccctggccgcg
cactggcaggtccagcagttgctcgagcacgacgcttatgacgacgcccgcgtcctcagc
gaggtcttcgtgcgcagcgcctcgctcgccgagagcctgcagctgccgctgccagtggtc
gactgcctcagccgcaggtccgcctacccggactccgtgccgcgggtgccgtgcgagtgg
aagaatcccgggcggctgtcgctggacgtcggtctggtgcagggaatgaaggtggtgatc
accggccacaccacgacgccccgggtcccactcgccggccgcatgaccgacgccggcctc
gacgtgatgaactccgtcagccgccagacgagcgtggtcgtgtgcaacgaccccggagtg
cagacgggcaagatccgcaaggcgatggccgagggcattcccgtcgtcacggagcagcag
ctcgaggacatgctcacccgggtgttgcccggcgaaccgaagacgcgtcccgtgaccgag
gtggccgcgccccctgccgagccggtgatcgaacctccgccgcagccggagactgctgag
tccgttgcatcgagccttccggagcggatgctcacgggtcagaagccgaagctgtggcag
ggccgacgagtgctgctcctcggcggtacccatctcgacgccgtgctcatgcgttcgcgt
ctcgtccagctcggtgcacgcccgtcgctcaacctcaccgcggcggtcacggacgtgctg
atgctcgaaggcggcgacagcgaccggcgcatgccacgcatcaccgcgcgcgagctccct
gttctgaccaagacggacgtcagcgccgcggtggagaagggcgtcgtgccgtcgcacatg
cgcatcgaatcccgcatctccgcgccggcgctcgcccgaggcgaggtcatcgacctgccg
gcccgaaagatgtcgtggacggtcaatgtcgcgtggcgcgccgagacggacgacttcgac
gtggacgtcgtcgccttcctgctgggagaggacgaaaaggtcgacagcgacgacgacttc
gtcttctacaacaaccccaccgccgaggtcggcgcagtcgagctatccattgacggaagc
agcgagcagagtgtacggctcgatctcgccgcgctgccggacgaatgcgcgcgcatcgcg
atcgccgcggccatcgacggcgaacgcaccttcggcgagctgggggccgtgtcggtgagc
gtggacggtgaggacggcacggcggcgacgttcgtgctcgacgccggtaccaccgaacgg
accatggtcctcaccgaaatctaccggcgggcggggaagtggcggctgcgtgcggtgggg
caggggtacgacgacgggctgaccgagttggcggtgcggtacggcgtggacgtcgactga
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