Rhodococcus ruber: CS378_25125
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Entry
CS378_25125 CDS
T05142
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
rrz
Rhodococcus ruber
Pathway
rrz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rrz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CS378_25125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rrz03021
]
CS378_25125
03019 Messenger RNA biogenesis [BR:
rrz03019
]
CS378_25125
Transcription machinery [BR:
rrz03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CS378_25125
Messenger RNA biogenesis [BR:
rrz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CS378_25125
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
AAA_25
Spore_III_AA
NACHT
VWA_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ATQ31700
LinkDB
All DBs
Position
5498867..5500906
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AA seq
679 aa
AA seq
DB search
MTDTDLIATPVLDTTDSSAGAQATDPAQTAPRAGRRGAGLSGMVLAELRTLAAELGIKGT
SGMRKGDLIAAIKERQSGGAAEPAPAPEQPARTARTRRARGAAQDAAGADTAASADTAAP
AAESAQAQPAATTSPERPAAAEQPAEGEAEGGRRGRQRRGRRGGDQAAETATTEAPKDAA
EARADEKPRAEEKTEEKAEPSDGGRRERGQRDGQRDQRDGQRDQRDGQRDQRDGQRDQGE
RRREDRGQGPRQDGRDGRGGDDDEDGRGRRGRRFRERRRGRDRGEAGGDTREPEIREDDV
LQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNMVRKNGLRRGDAITGAVRVPREGEQG
NQRQKFNPLVRLDTVNGGDVEAAKRRPEFNKLTPLYPNQRLRLETTPNILTTRVIDLIMP
IGKGQRALIVSPPKAGKTTVMQDIANAITTNNPECYLMVVLVDERPEEVTDMQRSVKGEV
IASTFDRPPSDHTSVAELAIERAKRLVEQGRDVVVLLDSITRLGRAYNNSSPASGRILSG
GVDSTALYPPKRFLGAARNIENGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLDR
KIAERRVFPAVDVNPSGTRKDELLMSPDEFAVVHKLRRVLSGLDSHQAIDLLIDRLKKSK
SNIEFLLQVSKTAPGALDD
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
gtgacagatacggacctgatcgctacgcctgttctcgataccacggattcgtccgcggga
gcgcaggccaccgatcctgcacagactgcaccgcgtgccggccggcgtggtgccggtctc
tccggcatggtgctggccgagctgcggaccctcgcggccgaactcggcatcaagggaacc
tccgggatgcgtaagggcgatctcatcgccgcgatcaaggagcggcagagcggcggagcc
gccgagccggctcctgcgccggaacagcccgcccggaccgcccggactcgtcgcgcccgt
ggtgccgcccaggacgcggccggcgccgacaccgccgcctctgcggacactgccgccccc
gccgccgagtcggcgcaggcgcagcccgctgcgacgacgtcgcccgaacggcctgccgcg
gcggaacagcccgccgagggcgaggccgagggtggccgccggggtcgtcagcgtcgcggt
cgccgaggtggcgaccaggccgccgagacggccaccaccgaggcacccaaggacgccgcc
gaggcacgagccgacgagaagccgcgcgccgaggagaagaccgaggagaaggccgaaccg
tccgacggcggtcgccgcgagcgcggtcagcgcgacggccagcgtgaccagcgcgacggc
cagcgtgaccagcgcgacggccagcgtgaccagcgcgacggccagcgtgaccagggcgaa
cgccgccgcgaggaccgtggtcagggtccccgtcaggacggccgcgacggccggggtggc
gacgacgacgaggacggccgcggacgccgcggccggcgcttccgggagcgtcgtcgcgga
cgcgaccgcggcgaggccggcggggacacccgcgagcccgagatccgcgaggacgacgtc
ctgcagccggtcgccggaatcctcgacgtcctggacaactacgcgttcgtccggacctcc
gggtacctggccggtcccaacgacgtgtacgtctcgatgaacatggtgcgcaagaacggc
ctgcgccgcggcgacgccatcaccggcgcggtccgcgtgccgcgtgagggggagcagggc
aaccagcggcagaagttcaacccgctggtccggctcgacacggtcaacggcggcgacgtc
gaggccgccaagcgccgcccggagttcaacaagctcaccccgctgtacccgaaccagcgg
ctgcggctcgagaccaccccgaacatcctcaccacccgcgtgatcgacctgatcatgccg
atcggcaagggccagcgtgccctgatcgtctcgccgccgaaggccggcaagacgacggtg
atgcaggacatcgcgaacgcgatcacgaccaacaatcccgagtgctacctgatggtcgtg
ctggtggacgagcggcccgaagaggtcaccgacatgcagcgttcggtcaagggcgaggtc
atcgcctcgaccttcgaccggccgccgtcggaccacacgtccgtcgccgagctggccatc
gagcgtgccaagcggctcgtcgagcagggccgcgacgtcgtcgtcctgctcgactcgatc
acccgcctcggccgcgcgtacaacaactcgtcgccggcgtcgggccgcatcctctccggt
ggtgtcgactcgaccgccctgtacccgccgaagcggttcctgggcgcggctcgcaacatc
gagaacggcggctcgctcaccatcatcgccacggccatggtggagacgggttcgacgggc
gacacggtgatcttcgaggagttcaagggcaccggcaacgccgagctcaagctcgatcgc
aagatcgccgagcgacgcgtgttcccggcggtggacgtcaacccctccggcacgcgcaag
gacgagctgctgatgagccccgacgagttcgcggtggtgcacaagctgcgccgcgtgctc
tccggcctggactcgcaccaggccatcgatctgctcatcgaccggctcaagaagagcaag
agcaacatcgagttcctcctgcaggtgtcgaagacggcgccgggagcactcgacgactga
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