Renibacterium salmoninarum: RSal33209_0887
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Entry
RSal33209_0887 CDS
T00641
Symbol
rtcB
Name
(GenBank) RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
rsa
Renibacterium salmoninarum
Brite
KEGG Orthology (KO) [BR:
rsa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rsa03016
]
RSal33209_0887 (rtcB)
Enzymes [BR:
rsa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
RSal33209_0887 (rtcB)
Transfer RNA biogenesis [BR:
rsa03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
RSal33209_0887 (rtcB)
Prokaryotic type
tRNA splicing ligases
RSal33209_0887 (rtcB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ABY22630
UniProt:
A9WQN1
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All DBs
Position
751796..752842
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AA seq
348 aa
AA seq
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MRTWVMGATVGSVIPTLGAIIPAAVGVDIGCGMIAVKTQFQASELPEDQKILREQIERAV
PLSAGSYNRKVVATAARRIESLKELAAKADFDPGSYAGNWELQLGTLGSGNHFIEVSLDE
DDGVWLFLHSGSRGVGNRIAQKHIKEAQRLAKQYWIELPDPDLAYLVEGTLEFAAYIRQL
KWAQQFALLNREEMMDRVIRQFSDWVGAAVIEQDRINCHHNFTEKETYFGKSVWLSRKGA
IKASPGTPGLIPGSMGTASYVVVGKGNAMGMDSSPHGAAREYSRSRTRKSFTHDQLRAAM
VGIEYRDTDAFIDEIPQAYKPIDTVMADATDLVEIKHTLRQIINVKGD
NT seq
1047 nt
NT seq
+upstream
nt +downstream
nt
atgcgcacttgggtaatgggggcaaccgttggctcggtgatccctacccttggcgcgatt
attccggccgccgtcggggtagatattggctgcggcatgatcgcagtcaaaacgcagttt
caggccagcgaactgcccgaggaccagaagattttgcgggaacagattgaacgagctgtg
ccgctttccgcaggcagttacaaccgcaaggttgttgccaccgcggcgcggcggattgaa
tcgttgaaggaattggctgcgaaggccgatttcgatccgggaagttacgccgggaattgg
gagctgcagctgggcacgctgggcagcgggaaccacttcattgaagtctccctagacgag
gacgacggcgtgtggttgtttttgcactccggctcaaggggagtgggcaaccggattgcg
cagaagcacattaaggaagcacagcgacttgccaagcagtattggattgaacttcctgat
ccagatctggcctatttggtagaagggacgctggaatttgcggcctatattcggcagctg
aagtgggcacagcagttcgctttgttgaatcgggaagaaatgatggaccgggtgatccgg
cagttctccgattgggtaggtgctgcggttattgagcaggatcggatcaactgtcatcac
aatttcaccgaaaaggaaacgtattttggaaagtcagtatggctttcccggaagggtgcg
attaaggccagcccgggcacccctgggctgatcccgggttctatgggcacggcgtcgtac
gtagtggttggcaagggcaacgcgatgggcatggactcctcgccgcacggtgctgcccgg
gaatactctcggtcccggactcggaagagctttacccatgaccagctgcgcgctgcgatg
gttggcattgaataccgggatactgacgcgtttattgatgaaattccgcaggcatataag
ccgatcgacaccgtgatggcggatgctacagatctggtggaaatcaagcacaccctgcgg
cagatcattaacgtcaagggtgactag
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